KEGG   PATHWAY: bsa03018
Entry
bsa03018                    Pathway                                
Name
RNA degradation - Phocaeicola salanitronis
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bsa03018  RNA degradation
bsa03018

Other DBs
GO: 0006401
Organism
Phocaeicola salanitronis [GN:bsa]
Gene
Bacsa_2268  Enolase [KO:K01689] [EC:4.2.1.11]
Bacsa_2204  Polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
Bacsa_0630  DEAD/DEAH box helicase domain protein [KO:K11927] [EC:5.6.2.7]
Bacsa_2458  ribonuclease R [KO:K12573] [EC:3.1.13.1]
Bacsa_2116  DEAD/DEAH box helicase domain protein [KO:K05592] [EC:5.6.2.7]
Bacsa_1561  ATP-dependent DNA helicase, RecQ family [KO:K03654] [EC:5.6.2.4]
Bacsa_1587  ATP-dependent DNA helicase, RecQ family [KO:K03654] [EC:5.6.2.4]
Bacsa_1794  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
Bacsa_1305  helicase domain protein [KO:K03654] [EC:5.6.2.4]
Bacsa_3069  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
Bacsa_0011  transcription termination factor Rho [KO:K03628]
Bacsa_3051  2,3 cyclic-nucleotide 2-phosphodiesterase [KO:K18682] [EC:3.1.-.-]
Bacsa_3542  beta-lactamase domain protein [KO:K12574] [EC:3.1.-.-]
Bacsa_3294  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Bacsa_3339  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Bacsa_1572  Chaperone protein dnaK [KO:K04043]
Bacsa_1698  Heat shock protein 70 [KO:K04043]
Bacsa_1872  60 kDa chaperonin [KO:K04077] [EC:5.6.1.7]
Bacsa_3299  polyphosphate kinase 1 [KO:K00937] [EC:2.7.4.1]
Bacsa_2724  polynucleotide adenylyltransferase/metal dependent phosphohydrolase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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