KEGG   PATHWAY: bsf00020
Entry
bsf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella suis bv. 1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsf00020  Citrate cycle (TCA cycle)
bsf00020

Module
bsf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsf00020]
bsf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsf00020]
bsf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsf00020]
bsf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsf00020]
bsf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsf00020]
Other DBs
GO: 0006099
Organism
Brucella suis bv. 1 [GN:bsf]
Gene
BSS2_I1117  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BSS2_I0091  acnA; acnA [KO:K01681] [EC:4.2.1.3]
BSS2_I1167  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BSS2_I1859  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSS2_I1858  sucB; sucB [KO:K00658] [EC:2.3.1.61]
BSS2_I1095  lpdA-1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSS2_II0502  lpdA-3; lpdA-3 [KO:K00382] [EC:1.8.1.4]
BSS2_I1854  lpdA-2; lpdA-2 [KO:K00382] [EC:1.8.1.4]
BSS2_I1861  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BSS2_I1862  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BSS2_I1030  acetate CoA-transferase alpha subunit [KO:K18118] [EC:2.8.3.18]
BSS2_I1839  sdhA; sdhA [KO:K00239] [EC:1.3.5.1]
BSS2_I1838  sdhB; sdhB [KO:K00240] [EC:1.3.5.1]
BSS2_I1841  sdhC; succinate dehydrogenase cytochrome B-556 subunit [KO:K00241]
BSS2_I1840  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BSS2_I0938  fumB; fumB [KO:K01676] [EC:4.2.1.2]
BSS2_II0181  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BSS2_I1863  mdh; mdh [KO:K00024] [EC:1.1.1.37]
BSS2_I1724  pyc [KO:K01958] [EC:6.4.1.1]
BSS2_I2023  pckA; pckA [KO:K01610] [EC:4.1.1.49]
BSS2_I1098  pdhA; pdhA [KO:K00161] [EC:1.2.4.1]
BSS2_I1097  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BSS2_I1096  aceF; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BSS2_II0032  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsf00010  Glycolysis / Gluconeogenesis
bsf00053  Ascorbate and aldarate metabolism
bsf00061  Fatty acid biosynthesis
bsf00071  Fatty acid degradation
bsf00190  Oxidative phosphorylation
bsf00220  Arginine biosynthesis
bsf00250  Alanine, aspartate and glutamate metabolism
bsf00280  Valine, leucine and isoleucine degradation
bsf00350  Tyrosine metabolism
bsf00470  D-Amino acid metabolism
bsf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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