KEGG   PATHWAY: bze03008
Entry
bze03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Bipolaris zeicola
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
bze03008  Ribosome biogenesis in eukaryotes
bze03008

Organism
Bipolaris zeicola [GN:bze]
Gene
COCCADRAFT_85141  hypothetical protein [KO:K03115]
COCCADRAFT_33190  hypothetical protein [KO:K03115]
COCCADRAFT_106644  hypothetical protein [KO:K03097] [EC:2.7.11.1]
COCCADRAFT_151  hypothetical protein [KO:K14544]
COCCADRAFT_109643  hypothetical protein [KO:K14545]
COCCADRAFT_110749  hypothetical protein [KO:K14545]
COCCADRAFT_89199  hypothetical protein [KO:K14546]
COCCADRAFT_94197  hypothetical protein [KO:K14548]
COCCADRAFT_97314  hypothetical protein [KO:K14549]
COCCADRAFT_1363  hypothetical protein [KO:K14550]
COCCADRAFT_86599  hypothetical protein [KO:K14552]
COCCADRAFT_22533  hypothetical protein [KO:K14553]
COCCADRAFT_86587  hypothetical protein [KO:K14554]
COCCADRAFT_21936  hypothetical protein [KO:K14555]
COCCADRAFT_4315  hypothetical protein [KO:K14556]
COCCADRAFT_24725  hypothetical protein [KO:K14557]
COCCADRAFT_3790  hypothetical protein [KO:K14558]
COCCADRAFT_95539  hypothetical protein [KO:K14559]
COCCADRAFT_107052  hypothetical protein [KO:K14560]
COCCADRAFT_96202  hypothetical protein [KO:K14561]
COCCADRAFT_28697  hypothetical protein [KO:K14563] [EC:2.1.1.-]
COCCADRAFT_80534  hypothetical protein [KO:K14564]
COCCADRAFT_88737  hypothetical protein [KO:K14565]
COCCADRAFT_99569  hypothetical protein [KO:K12845]
COCCADRAFT_36662  hypothetical protein [KO:K11131] [EC:5.4.99.-]
COCCADRAFT_3279  hypothetical protein [KO:K11129]
COCCADRAFT_80770  hypothetical protein [KO:K11128]
COCCADRAFT_3764  hypothetical protein [KO:K11130]
COCCADRAFT_33862  hypothetical protein [KO:K14566]
COCCADRAFT_93573  hypothetical protein [KO:K14567]
COCCADRAFT_26154  hypothetical protein [KO:K03685] [EC:3.1.26.3]
COCCADRAFT_102995  hypothetical protein [KO:K03685] [EC:3.1.26.3]
COCCADRAFT_39015  hypothetical protein [KO:K03685] [EC:3.1.26.3]
COCCADRAFT_92774  hypothetical protein [KO:K03685] [EC:3.1.26.3]
COCCADRAFT_91362  hypothetical protein [KO:K14568] [EC:2.1.1.260]
COCCADRAFT_105940  hypothetical protein [KO:K14569]
COCCADRAFT_89278  hypothetical protein [KO:K14521] [EC:2.3.1.-]
COCCADRAFT_89356  hypothetical protein [KO:K11108]
COCCADRAFT_40475  hypothetical protein [KO:K01164] [EC:3.1.26.5]
COCCADRAFT_107388  hypothetical protein [KO:K14522] [EC:3.1.26.5]
COCCADRAFT_37738  hypothetical protein [KO:K03538] [EC:3.1.26.5]
COCCADRAFT_29216  hypothetical protein [KO:K03537] [EC:3.1.26.5]
COCCADRAFT_92094  hypothetical protein [KO:K14526] [EC:3.1.26.5]
COCCADRAFT_96051  hypothetical protein [KO:K14528] [EC:3.1.26.5]
COCCADRAFT_8396  hypothetical protein [KO:K03539] [EC:3.1.26.5]
COCCADRAFT_107438  hypothetical protein [KO:K14532]
COCCADRAFT_1456  hypothetical protein [KO:K14530] [EC:3.1.26.5]
COCCADRAFT_90162  hypothetical protein [KO:K06943]
COCCADRAFT_30094  hypothetical protein [KO:K14537]
COCCADRAFT_37208  hypothetical protein [KO:K14538]
COCCADRAFT_4702  hypothetical protein [KO:K14571]
COCCADRAFT_24324  hypothetical protein [KO:K14572]
COCCADRAFT_39651  hypothetical protein [KO:K14573]
COCCADRAFT_25091  hypothetical protein [KO:K11883]
COCCADRAFT_26453  hypothetical protein [KO:K14758] [EC:2.7.11.1]
COCCADRAFT_4090  hypothetical protein [KO:K07936]
COCCADRAFT_93486  hypothetical protein [KO:K14290]
COCCADRAFT_83505  hypothetical protein [KO:K07562]
COCCADRAFT_23002  hypothetical protein [KO:K14284]
COCCADRAFT_4594  hypothetical protein [KO:K03264]
COCCADRAFT_33068  hypothetical protein [KO:K14574]
COCCADRAFT_9226  hypothetical protein [KO:K14536] [EC:3.6.5.-]
COCCADRAFT_94771  hypothetical protein [KO:K14539] [EC:3.6.1.-]
COCCADRAFT_25390  hypothetical protein [KO:K14575]
COCCADRAFT_83864  hypothetical protein [KO:K18532] [EC:2.7.4.3]
COCCADRAFT_105767  hypothetical protein [KO:K07178] [EC:2.7.11.1]
COCCADRAFT_38572  hypothetical protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
bze03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system