KEGG   PATHWAY: camp00020
Entry
camp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter fetus subsp. testudinum 03-427
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
camp00020  Citrate cycle (TCA cycle)
camp00020

Module
camp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:camp00020]
camp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:camp00020]
camp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:camp00020]
Other DBs
GO: 0006099
Organism
Campylobacter fetus subsp. testudinum 03-427 [GN:camp]
Gene
CFT03427_0188  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CFT03427_0977  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CFT03427_0906  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CFT03427_0901  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CFT03427_0900  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CFT03427_0899  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CFT03427_0902  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CFT03427_0903  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CFT03427_0904  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CFT03427_0424  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
CFT03427_0423  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
CFT03427_0425  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CFT03427_0952  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CFT03427_0905  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CFT03427_0631  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
CFT03427_0667  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CFT03427_1267  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CFT03427_1268  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CFT03427_0401  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
camp00010  Glycolysis / Gluconeogenesis
camp00053  Ascorbate and aldarate metabolism
camp00061  Fatty acid biosynthesis
camp00190  Oxidative phosphorylation
camp00220  Arginine biosynthesis
camp00250  Alanine, aspartate and glutamate metabolism
camp00280  Valine, leucine and isoleucine degradation
camp00350  Tyrosine metabolism
camp00470  D-Amino acid metabolism
camp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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