KEGG   PATHWAY: caun00020
Entry
caun00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium felsineum DSM 793
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
caun00020  Citrate cycle (TCA cycle)
caun00020

Module
caun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:caun00020]
caun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:caun00020]
Other DBs
GO: 0006099
Organism
Clostridium felsineum DSM 793 [GN:caun]
Gene
CLAUR_013860  Citrate (Re)-synthase [KO:K05942] [EC:2.3.3.3]
CLAUR_013850  leuC; 3-isopropylmalate dehydratase large subunit [KO:K01681] [EC:4.2.1.3]
CLAUR_013840  icd; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
CLAUR_036470  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLAUR_036480  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLAUR_036490  padE; NADH-dependent phenylglyoxylate dehydrogenase subunit gamma [KO:K00177] [EC:1.2.7.3]
CLAUR_016420  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CLAUR_016430  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CLAUR_035780  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
CLAUR_035790  fumB; Fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
CLAUR_042360  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CLAUR_009890  Pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CLAUR_044690  Pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
caun00010  Glycolysis / Gluconeogenesis
caun00053  Ascorbate and aldarate metabolism
caun00061  Fatty acid biosynthesis
caun00071  Fatty acid degradation
caun00190  Oxidative phosphorylation
caun00220  Arginine biosynthesis
caun00250  Alanine, aspartate and glutamate metabolism
caun00280  Valine, leucine and isoleucine degradation
caun00350  Tyrosine metabolism
caun00470  D-Amino acid metabolism
caun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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