KEGG   PATHWAY: cbz03018
Entry
cbz03018                    Pathway                                
Name
RNA degradation - Clostridium beijerinckii ATCC 35702
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cbz03018  RNA degradation
cbz03018

Other DBs
GO: 0006401
Organism
Clostridium beijerinckii ATCC 35702 [GN:cbz]
Gene
Cbs_0602  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Cbs_1208  polynucleotide phosphorylase/polyadenylase [KO:K00962] [EC:2.7.7.8]
Cbs_0633  ribonuclease R [KO:K12573] [EC:3.1.13.1]
Cbs_5029  DEAD/DEAH box helicase domain-containing protein [KO:K05592] [EC:5.6.2.7]
Cbs_1822  DEAD/DEAH box helicase domain-containing protein [KO:K05592] [EC:5.6.2.7]
Cbs_2925  DEAD/DEAH box helicase domain-containing protein [KO:K05592] [EC:5.6.2.7]
Cbs_2779  DEAD/DEAH box helicase domain-containing protein [KO:K05592] [EC:5.6.2.7]
Cbs_1747  DEAD/DEAH box helicase domain-containing protein [KO:K05592] [EC:5.6.2.7]
Cbs_1824  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
Cbs_4475  ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
Cbs_0399  rho; transcription termination factor Rho [KO:K03628]
Cbs_1217  phosphodiesterase [KO:K18682] [EC:3.1.-.-]
Cbs_1109  beta-lactamase domain-containing protein [KO:K12574] [EC:3.1.-.-]
Cbs_4133  beta-lactamase domain-containing protein [KO:K12574] [EC:3.1.-.-]
Cbs_2259  beta-lactamase domain-containing protein [KO:K12574] [EC:3.1.-.-]
Cbs_4852  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Cbs_0830  dnaK; molecular chaperone DnaK [KO:K04043]
Cbs_0329  groEL; chaperonin GroEL [KO:K04077] [EC:5.6.1.7]
Cbs_2563  RNA chaperone Hfq [KO:K03666]
Cbs_2419  polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
LinkDB

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