PATHWAY: cfd01100 Help Entry cfd01100                    Pathway                                 Name Metabolic pathways - Citrobacter freundii Class BRITE hierarchy Pathway map cfd01100   Metabolic pathways Module cfd_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cfd01100] cfd_M00002   Glycolysis, core module involving three-carbon compounds [PATH:cfd01100] cfd_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfd01100] cfd_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cfd01100] cfd_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:cfd01100] cfd_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cfd01100] cfd_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cfd01100] cfd_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cfd01100] cfd_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfd01100] cfd_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfd01100] cfd_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfd01100] cfd_M00012   Glyoxylate cycle [PATH:cfd01100] cfd_M00015   Proline biosynthesis, glutamate => proline [PATH:cfd01100] cfd_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:cfd01100] cfd_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:cfd01100] cfd_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cfd01100] cfd_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cfd01100] cfd_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:cfd01100] cfd_M00021   Cysteine biosynthesis, serine => cysteine [PATH:cfd01100] cfd_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cfd01100] cfd_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:cfd01100] cfd_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:cfd01100] cfd_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:cfd01100] cfd_M00026   Histidine biosynthesis, PRPP => histidine [PATH:cfd01100] cfd_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:cfd01100] cfd_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:cfd01100] cfd_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:cfd01100] cfd_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cfd01100] cfd_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cfd01100] cfd_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cfd01100] cfd_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cfd01100] cfd_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cfd01100] cfd_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:cfd01100] cfd_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cfd01100] cfd_M00063   CMP-KDO biosynthesis [PATH:cfd01100] cfd_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:cfd01100] cfd_M00082   Fatty acid biosynthesis, initiation [PATH:cfd01100] cfd_M00083   Fatty acid biosynthesis, elongation [PATH:cfd01100] cfd_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:cfd01100] cfd_M00087   beta-Oxidation [PATH:cfd01100] cfd_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:cfd01100] cfd_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:cfd01100] cfd_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cfd01100] cfd_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:cfd01100] cfd_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:cfd01100] cfd_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:cfd01100] cfd_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:cfd01100] cfd_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:cfd01100] cfd_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:cfd01100] cfd_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:cfd01100] cfd_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:cfd01100] cfd_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:cfd01100] cfd_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cfd01100] cfd_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:cfd01100] cfd_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:cfd01100] cfd_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:cfd01100] cfd_M00136   GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:cfd01100] cfd_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:cfd01100] cfd_M00149   Succinate dehydrogenase, prokaryotes [PATH:cfd01100] cfd_M00150   Fumarate reductase, prokaryotes [PATH:cfd01100] cfd_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:cfd01100] cfd_M00168   CAM (Crassulacean acid metabolism), dark [PATH:cfd01100] cfd_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:cfd01100] cfd_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfd01100] cfd_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:cfd01100] cfd_M00417   Cytochrome o ubiquinol oxidase [PATH:cfd01100] cfd_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cfd01100] cfd_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:cfd01100] cfd_M00545   Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:cfd01100] cfd_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cfd01100] cfd_M00550   Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:cfd01100] cfd_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:cfd01100] cfd_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cfd01100] cfd_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:cfd01100] cfd_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:cfd01100] cfd_M00621   Glycine cleavage system [PATH:cfd01100] cfd_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cfd01100] cfd_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:cfd01100] cfd_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:cfd01100] cfd_M00844   Arginine biosynthesis, ornithine => arginine [PATH:cfd01100] cfd_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:cfd01100] cfd_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cfd01100] cfd_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:cfd01100] cfd_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:cfd01100] cfd_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cfd01100] cfd_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:cfd01100] cfd_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:cfd01100] cfd_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:cfd01100] cfd_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:cfd01100] cfd_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cfd01100] cfd_M00956   Lysine degradation, bacteria, L-lysine => succinate [PATH:cfd01100] cfd_M00970   Proline degradation, proline => glutamate [PATH:cfd01100] Organism Citrobacter freundii [GN:cfd] Related pathway cfd00010   Glycolysis / Gluconeogenesis cfd00020   Citrate cycle (TCA cycle) cfd00030   Pentose phosphate pathway cfd00040   Pentose and glucuronate interconversions cfd00051   Fructose and mannose metabolism cfd00052   Galactose metabolism cfd00053   Ascorbate and aldarate metabolism cfd00061   Fatty acid biosynthesis cfd00071   Fatty acid degradation cfd00130   Ubiquinone and other terpenoid-quinone biosynthesis cfd00190   Oxidative phosphorylation cfd00220   Arginine biosynthesis cfd00230   Purine metabolism cfd00240   Pyrimidine metabolism cfd00250   Alanine, aspartate and glutamate metabolism cfd00260   Glycine, serine and threonine metabolism cfd00261   Monobactam biosynthesis cfd00270   Cysteine and methionine metabolism cfd00280   Valine, leucine and isoleucine degradation cfd00290   Valine, leucine and isoleucine biosynthesis cfd00300   Lysine biosynthesis cfd00310   Lysine degradation cfd00330   Arginine and proline metabolism cfd00332   Carbapenem biosynthesis cfd00340   Histidine metabolism cfd00350   Tyrosine metabolism cfd00360   Phenylalanine metabolism cfd00361   Chlorocyclohexane and chlorobenzene degradation cfd00362   Benzoate degradation cfd00364   Fluorobenzoate degradation cfd00380   Tryptophan metabolism cfd00400   Phenylalanine, tyrosine and tryptophan biosynthesis cfd00401   Novobiocin biosynthesis cfd00410   beta-Alanine metabolism cfd00430   Taurine and hypotaurine metabolism cfd00440   Phosphonate and phosphinate metabolism cfd00450   Selenocompound metabolism cfd00460   Cyanoamino acid metabolism cfd00470   D-Amino acid metabolism cfd00480   Glutathione metabolism cfd00500   Starch and sucrose metabolism cfd00511   Other glycan degradation cfd00520   Amino sugar and nucleotide sugar metabolism cfd00521   Streptomycin biosynthesis cfd00523   Polyketide sugar unit biosynthesis cfd00525   Acarbose and validamycin biosynthesis cfd00540   Lipopolysaccharide biosynthesis cfd00541   O-Antigen nucleotide sugar biosynthesis cfd00542   O-Antigen repeat unit biosynthesis cfd00543   Exopolysaccharide biosynthesis cfd00550   Peptidoglycan biosynthesis cfd00552   Teichoic acid biosynthesis cfd00561   Glycerolipid metabolism cfd00562   Inositol phosphate metabolism cfd00564   Glycerophospholipid metabolism cfd00565   Ether lipid metabolism cfd00592   alpha-Linolenic acid metabolism cfd00620   Pyruvate metabolism cfd00621   Dioxin degradation cfd00622   Xylene degradation cfd00623   Toluene degradation cfd00625   Chloroalkane and chloroalkene degradation cfd00626   Naphthalene degradation cfd00627   Aminobenzoate degradation cfd00630   Glyoxylate and dicarboxylate metabolism cfd00633   Nitrotoluene degradation cfd00640   Propanoate metabolism cfd00650   Butanoate metabolism cfd00660   C5-Branched dibasic acid metabolism cfd00670   One carbon pool by folate cfd00680   Methane metabolism cfd00710   Carbon fixation by Calvin cycle cfd00720   Other carbon fixation pathways cfd00730   Thiamine metabolism cfd00740   Riboflavin metabolism cfd00750   Vitamin B6 metabolism cfd00760   Nicotinate and nicotinamide metabolism cfd00770   Pantothenate and CoA biosynthesis cfd00780   Biotin metabolism cfd00785   Lipoic acid metabolism cfd00790   Folate biosynthesis cfd00860   Porphyrin metabolism cfd00900   Terpenoid backbone biosynthesis cfd00907   Pinene, camphor and geraniol degradation cfd00910   Nitrogen metabolism cfd00920   Sulfur metabolism cfd00930   Caprolactam degradation cfd00946   Degradation of flavonoids cfd00999   Biosynthesis of various plant secondary metabolites cfd01040   Biosynthesis of unsaturated fatty acids cfd01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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