KEGG   PATHWAY: cfu00020
Entry
cfu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Collimonas fungivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfu00020  Citrate cycle (TCA cycle)
cfu00020

Module
cfu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfu00020]
cfu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfu00020]
cfu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfu00020]
cfu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfu00020]
cfu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfu00020]
Other DBs
GO: 0006099
Organism
Collimonas fungivorans [GN:cfu]
Gene
CFU_1751  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
CFU_1740  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CFU_3268  icdA; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CFU_0031  citC; Isocitrate dehydrogenase [NAD] [KO:K00030] [EC:1.1.1.41]
CFU_1752  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CFU_1753  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CFU_1754  odhL; Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFU_3556  lpd; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
CFU_3800  sucD; Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
CFU_3801  sucC; Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
CFU_1748  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFU_1749  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CFU_1746  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
CFU_1747  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
CFU_3353  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
CFU_1175  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CFU_1743  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFU_2146  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CFU_4426  pckG; Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CFU_3559  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CFU_3558  aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfu00010  Glycolysis / Gluconeogenesis
cfu00053  Ascorbate and aldarate metabolism
cfu00061  Fatty acid biosynthesis
cfu00071  Fatty acid degradation
cfu00190  Oxidative phosphorylation
cfu00220  Arginine biosynthesis
cfu00250  Alanine, aspartate and glutamate metabolism
cfu00280  Valine, leucine and isoleucine degradation
cfu00350  Tyrosine metabolism
cfu00470  D-Amino acid metabolism
cfu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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