KEGG   PATHWAY: cgel02010
Entry
cgel02010                   Pathway                                
Name
ABC transporters - Clostridium gelidum
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
cgel02010  ABC transporters
cgel02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Clostridium gelidum [GN:cgel]
Gene
psyc5s11_28000  sulfate transporter subunit [KO:K23163]
psyc5s11_27990  sulfate ABC transporter permease subunit CysT [KO:K02046]
psyc5s11_27980  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
psyc5s11_27970  cysA; sulfate/thiosulfate import ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
psyc5s11_04970  hypothetical protein [KO:K15497] [EC:7.3.2.5 7.3.2.6]
psyc5s11_14660  ABC transporter substrate-binding protein [KO:K15598]
psyc5s11_14650  ABC transporter permease [KO:K15599]
psyc5s11_14640  ABC transporter ATP-binding protein [KO:K15600]
psyc5s11_35660  modA_2; molybdate ABC transporter substrate-binding protein [KO:K02020]
psyc5s11_04960  modB_1; molybdate ABC transporter permease [KO:K02018]
psyc5s11_35670  modB_2; molybdenum ABC transporter permease subunit [KO:K02018]
psyc5s11_35680  modC; ABC transporter [KO:K02017] [EC:7.3.2.5]
psyc5s11_35750  potB; spermidine/putrescine ABC transporter permease [KO:K11071]
psyc5s11_35760  potA; spermidine/putrescine import ATP-binding protein PotA [KO:K11072] [EC:7.6.2.11]
psyc5s11_35740  hypothetical protein [KO:K11074]
psyc5s11_06990  msmX_1; ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
psyc5s11_45790  msmX_2; ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
psyc5s11_34810  maltose ABC transporter substrate-binding protein [KO:K15770]
psyc5s11_34800  hypothetical protein [KO:K15771]
psyc5s11_34790  sugar ABC transporter permease [KO:K15772]
psyc5s11_10770  ABC transporter substrate-binding protein [KO:K10117]
psyc5s11_11680  hypothetical protein [KO:K10117]
psyc5s11_10780  yurN; putative ABC transporter permease protein YurN [KO:K10118]
psyc5s11_11690  msmF; sugar ABC transporter permease [KO:K10118]
psyc5s11_10790  sugar ABC transporter permease [KO:K10119]
psyc5s11_11700  sugar ABC transporter permease [KO:K10119]
psyc5s11_38460  ABC transporter substrate-binding protein [KO:K10188]
psyc5s11_38450  lacF2; lactose ABC transporter permease [KO:K10189]
psyc5s11_38440  lacG2; lactose ABC transporter permease [KO:K10190]
psyc5s11_13940  ABC transporter substrate-binding protein [KO:K17318]
psyc5s11_16130  ABC transporter substrate-binding protein [KO:K17318]
psyc5s11_02250  sugar ABC transporter permease [KO:K17319]
psyc5s11_12040  sugar ABC transporter permease [KO:K17319]
psyc5s11_13950  sugar ABC transporter permease [KO:K17319]
psyc5s11_02260  sugar ABC transporter permease [KO:K17320]
psyc5s11_12050  ABC transporter permease [KO:K17320]
psyc5s11_13960  sugar ABC transporter permease [KO:K17320]
psyc5s11_48080  sugar ABC transporter ATP-binding protein [KO:K10241]
psyc5s11_40110  araN; putative arabinose-binding protein [KO:K17234]
psyc5s11_40100  araP; L-arabinose transport system permease protein AraP [KO:K17235]
psyc5s11_40090  araQ; L-arabinose transport system permease protein AraQ [KO:K17236]
psyc5s11_48550  sugar ABC transporter substrate-binding protein [KO:K10546]
psyc5s11_48530  araH; ABC transporter permease [KO:K10547]
psyc5s11_48540  xylose ABC transporter ATP-binding protein [KO:K10548] [EC:7.5.2.-]
psyc5s11_00610  BMP family ABC transporter substrate-binding protein [KO:K07335]
psyc5s11_13710  tcsA; CD4+ T-cell-stimulating antigen [KO:K07335]
psyc5s11_00630  ABC transporter permease [KO:K23535]
psyc5s11_13730  ABC transporter permease [KO:K23535]
psyc5s11_00640  sugar ABC transporter permease [KO:K23536]
psyc5s11_13740  sugar ABC transporter permease [KO:K23536]
psyc5s11_00620  heme ABC transporter ATP-binding protein [KO:K23537]
psyc5s11_13720  heme ABC transporter ATP-binding protein [KO:K23537]
psyc5s11_00730  D-ribose ABC transporter substrate-binding protein [KO:K10439]
psyc5s11_17190  LacI family transcriptional regulator [KO:K10439]
psyc5s11_00720  rbsC; ribose ABC transporter permease [KO:K10440]
psyc5s11_00710  rbsA; ribose import ATP-binding protein RbsA [KO:K10441] [EC:7.5.2.7]
psyc5s11_00700  rbsD; D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
psyc5s11_48670  LacI family transcriptional regulator [KO:K23508]
psyc5s11_48640  sugar ABC transporter permease [KO:K23509]
psyc5s11_48650  sugar ABC transporter permease [KO:K23509]
psyc5s11_48660  sugar ABC transporter ATP-binding protein [KO:K10820] [EC:7.5.2.9]
psyc5s11_48380  mglB_2; D-galactose-binding periplasmic protein [KO:K10540]
psyc5s11_48390  mglB_3; galactose ABC transporter substrate-binding protein [KO:K10540]
psyc5s11_48450  mglB_4; galactose ABC transporter substrate-binding protein [KO:K10540]
psyc5s11_48430  mglC; galactoside ABC transporter permease MglC [KO:K10541]
psyc5s11_48440  mglA; galactose/methyl galactoside import ATP-binding protein MglA [KO:K10542] [EC:7.5.2.11]
psyc5s11_39960  D-xylose ABC transporter substrate-binding protein [KO:K10543]
psyc5s11_39940  xylose ABC transporter permease [KO:K10544]
psyc5s11_39950  xylG; xylose import ATP-binding protein XylG [KO:K10545] [EC:7.5.2.10]
psyc5s11_07020  ABC transporter substrate-binding protein [KO:K05813]
psyc5s11_07000  glycerol-3-phosphate ABC transporter permease [KO:K05814]
psyc5s11_07010  ABC transporter permease [KO:K05815]
psyc5s11_17330  phosphate ABC transporter substrate-binding protein [KO:K02040]
psyc5s11_42740  phosphate transport system permease protein [KO:K02037]
psyc5s11_42730  phosphate transport system permease protein PstA [KO:K02038]
psyc5s11_42720  pstB; phosphate import ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
psyc5s11_39850  hypothetical protein [KO:K10036 K10037]
psyc5s11_39860  hypothetical protein [KO:K10036 K10037]
psyc5s11_39830  glnQ_2; glutamine ABC transporter ATP-binding protein [KO:K10038] [EC:7.4.2.1]
psyc5s11_06110  amino acid ABC transporter substrate-binding protein [KO:K16957]
psyc5s11_06120  cysteine ABC transporter permease [KO:K16958]
psyc5s11_06130  amino acid ABC transporter permease [KO:K16959]
psyc5s11_06140  glnQ5; arginine ABC transporter ATP-binding protein [KO:K16960] [EC:7.4.2.1]
psyc5s11_51300  amino acid ABC transporter [KO:K23059]
psyc5s11_51280  amino acid ABC transporter permease [KO:K17077]
psyc5s11_10200  peptide ABC transporter ATP-binding protein [KO:K23060] [EC:7.4.2.1]
psyc5s11_51270  polar amino acid ABC transporter ATP-binding protein [KO:K23060] [EC:7.4.2.1]
psyc5s11_12250  hypothetical protein [KO:K17073]
psyc5s11_12260  amino acid ABC transporter substrate-binding protein [KO:K17074]
psyc5s11_12270  peptide ABC transporter ATP-binding protein [KO:K17076]
psyc5s11_20490  branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999]
psyc5s11_35120  amino acid-binding protein [KO:K01999]
psyc5s11_54160  ethanolamine utilization protein EutJ [KO:K01999]
psyc5s11_20500  branched-chain amino acid ABC transporter permease [KO:K01997]
psyc5s11_35110  branched-chain amino acid ABC transporter permease [KO:K01997]
psyc5s11_54170  branched-chain amino acid ABC transporter permease [KO:K01997]
psyc5s11_20510  branched-chain amino acid ABC transporter permease [KO:K01998]
psyc5s11_35100  branched-chain amino acid ABC transporter permease [KO:K01998]
psyc5s11_54180  ABC transporter [KO:K01998]
psyc5s11_20520  ABC transporter ATP-binding protein [KO:K01995]
psyc5s11_35090  livG; ABC transporter ATP-binding protein [KO:K01995]
psyc5s11_54190  ABC transporter ATP-binding protein [KO:K01995]
psyc5s11_20530  ABC transporter ATP-binding protein [KO:K01996]
psyc5s11_35080  ABC transporter ATP-binding protein [KO:K01996]
psyc5s11_54200  ABC transporter ATP-binding protein [KO:K01996]
psyc5s11_09210  metQ2; lipoprotein [KO:K02073]
psyc5s11_21420  sfbA; metal ABC transporter substrate-binding protein [KO:K02073]
psyc5s11_02940  hypothetical protein [KO:K02072]
psyc5s11_09200  ABC transporter permease [KO:K02072]
psyc5s11_21440  sfbC; ABC transporter permease [KO:K02072]
psyc5s11_02930  hypothetical protein [KO:K02071]
psyc5s11_09190  metN; methionine import ATP-binding protein MetN [KO:K02071]
psyc5s11_21430  metN1; methionine import ATP-binding protein MetN 1 [KO:K02071]
psyc5s11_52780  peptide ABC transporter substrate-binding protein [KO:K15580]
psyc5s11_52820  peptide ABC transporter permease [KO:K15581]
psyc5s11_52810  peptide ABC transporter permease [KO:K15582]
psyc5s11_24600  ABC transporter ATP-binding protein [KO:K15583]
psyc5s11_52800  ABC transporter ATP-binding protein [KO:K15583]
psyc5s11_24610  oppF; oligopeptide transport ATP-binding protein OppF [KO:K10823]
psyc5s11_52790  ABC transporter ATP-binding protein [KO:K10823]
psyc5s11_07350  ABC transporter substrate-binding protein [KO:K09815]
psyc5s11_47340  metal ABC transporter permease [KO:K09816]
psyc5s11_47330  metal ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
psyc5s11_34670  hypothetical protein [KO:K02009]
psyc5s11_08480  cobalt transporter CbiM [KO:K02007]
psyc5s11_34680  cobalamin biosynthesis protein CbiM [KO:K02007]
psyc5s11_08490  cobalt permease [KO:K02008]
psyc5s11_34700  cbiQ; cobalt ECF transporter T component CbiQ [KO:K02008]
psyc5s11_08500  putative ABC transporter ATP-binding protein [KO:K02006]
psyc5s11_34690  hypothetical protein [KO:K02006]
psyc5s11_54410  biotin synthesis protein BioY [KO:K03523]
psyc5s11_01980  ecfT; energy-coupling factor transporter transmembrane protein EcfT [KO:K16785]
psyc5s11_37830  cobalt ABC transporter permease [KO:K16785]
psyc5s11_01960  ecfA1; energy-coupling factor transporter ATP-binding protein EcfA1 [KO:K16786] [EC:7.-.-.-]
psyc5s11_01970  ecfA2; energy-coupling factor transporter ATP-binding protein EcfA2 [KO:K16787] [EC:7.-.-.-]
psyc5s11_52990  ABC transporter permease [KO:K19310]
psyc5s11_52980  hypothetical protein [KO:K19310]
psyc5s11_53000  bacitracin ABC transporter ATP-binding protein [KO:K19309]
psyc5s11_23580  ABC transporter permease [KO:K11632]
psyc5s11_23570  ABC transporter ATP-binding protein [KO:K11631]
psyc5s11_43290  ABC transporter ATP-binding protein [KO:K11631]
psyc5s11_40680  cdd4; bacitracin ABC transporter ATP-binding protein [KO:K20459]
psyc5s11_48310  multidrug ABC transporter permease [KO:K20491]
psyc5s11_48300  multidrug ABC transporter permease [KO:K20492]
psyc5s11_48320  mutF; lantibiotic ABC transporter ATP-binding protein [KO:K20490]
psyc5s11_04570  permease [KO:K09808]
psyc5s11_04580  lolD; lipoprotein-releasing system ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
psyc5s11_41700  ftsX_1; cell division protein FtsX [KO:K09811]
psyc5s11_52020  ftsX_2; cell division protein FtsX [KO:K09811]
psyc5s11_52030  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
psyc5s11_24050  ABC transporter ATP-binding protein [KO:K16921]
psyc5s11_03580  ABC transporter ATP-binding protein [KO:K18889]
psyc5s11_15340  ATPase [KO:K18889]
psyc5s11_21610  ABC transporter [KO:K18889]
psyc5s11_03590  ABC transporter ATP-binding protein [KO:K18890]
psyc5s11_15350  ABC transporter ATP-binding protein [KO:K18890]
psyc5s11_21600  multidrug ABC transporter ATP-binding protein [KO:K18890]
psyc5s11_11760  ABC transporter [KO:K18887]
psyc5s11_16290  multidrug ABC transporter ATP-binding protein [KO:K18887]
psyc5s11_19810  multidrug ABC transporter ATP-binding protein [KO:K18887]
psyc5s11_28530  multidrug ABC transporter ATP-binding protein [KO:K18887]
psyc5s11_11770  ABC transporter [KO:K18888]
psyc5s11_16300  sugar ABC transporter ATP-binding protein [KO:K18888]
psyc5s11_19820  ABC transporter [KO:K18888]
psyc5s11_28520  hypothetical protein [KO:K18888]
psyc5s11_03300  bacteriocin cleavage/export ABC transporter [KO:K20344]
psyc5s11_21990  ABC-F type ribosomal protection protein [KO:K18231]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
LinkDB

DBGET integrated database retrieval system