KEGG   PATHWAY: cim03030
Entry
cim03030                    Pathway                                
Name
DNA replication - Coccidioides immitis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cim03030  DNA replication
cim03030

Organism
Coccidioides immitis [GN:cim]
Gene
CIMG_12678  CIMG02474; RNase H domain-containing protein [KO:K03469] [EC:3.1.26.4]
CIMG_04253  replication factor-a protein 1 (rpa1) [KO:K07466]
CIMG_04909  proliferating cell nuclear antigen [KO:K04802]
CIMG_13558  CIMG10249; DNA replication helicase Dna2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
CIMG_00504  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
CIMG_00793  DNA ligase I, ATP-dependent (dnl1) [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
CIMG_07889  DNA polymerase (pol2) [KO:K02320] [EC:2.7.7.7]
CIMG_09270  DNA polymerase alpha/primase associated subunit [KO:K02321]
CIMG_05534  DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
CIMG_04813  DNA primase large subunit [KO:K02685]
CIMG_09472  DNA polymerase (pol2) [KO:K02327] [EC:2.7.7.7]
CIMG_07567  DNA polymerase delta subunit 2 [KO:K02328]
CIMG_09453  DNA polymerase delta subunit 3 [KO:K03504]
CIMG_09701  DNA polymerase delta subunit 4 [KO:K03505]
CIMG_01894  DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
CIMG_04251  DNA polymerase epsilon subunit B [KO:K02325] [EC:2.7.7.7]
CIMG_08958  CBF/NF-Y family transcription factor [KO:K02326] [EC:2.7.7.7]
CIMG_00047  DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
CIMG_05014  CIMG05015; DNA replication licensing factor mcm3 [KO:K02541] [EC:5.6.2.3]
CIMG_12809  CIMG01018; cell division control protein 54 [KO:K02212] [EC:5.6.2.3]
CIMG_06459  DNA replication licensing factor mcm5 [KO:K02209] [EC:5.6.2.3]
CIMG_00713  DNA replication licensing factor Mcm6 [KO:K02542] [EC:5.6.2.3]
CIMG_07549  DNA replication licensing factor CDC47 [KO:K02210] [EC:5.6.2.3]
CIMG_00224  replication factor A2 [KO:K10739]
CIMG_05232  chromosome transmission fidelity factor [KO:K10754]
CIMG_02631  replication factor C subunit 4 [KO:K10755]
CIMG_07623  DNA replication factor C subunit Rfc2 [KO:K10755]
CIMG_06393  activator 1 subunit 3 [KO:K10756]
CIMG_05230  replication factor C subunit 5 [KO:K10756]
CIMG_02535  ribonuclease HII [KO:K10743] [EC:3.1.26.4]
CIMG_00759  ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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