KEGG   PATHWAY: cit00270
Entry
cit00270                    Pathway                                
Name
Cysteine and methionine metabolism - Citrus sinensis (Valencia orange)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
cit00270  Cysteine and methionine metabolism
cit00270

Module
cit_M00021  Cysteine biosynthesis, serine => cysteine [PATH:cit00270]
cit_M00034  Methionine salvage pathway [PATH:cit00270]
cit_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:cit00270]
Other DBs
GO: 0006534 0006555
Organism
Citrus sinensis (Valencia orange) [GN:cit]
Gene
102615316  serine acetyltransferase 1, chloroplastic-like [KO:K00640] [EC:2.3.1.30]
102622152  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
102610473  cysteine synthase 2 isoform X1 [KO:K01738] [EC:2.5.1.47]
102630395  cysteine synthase-like isoform X1 [KO:K01738] [EC:2.5.1.47]
102610969  cysteine synthase [KO:K01738] [EC:2.5.1.47]
102611751  bifunctional L-3-cyanoalanine synthase/cysteine synthase D2-like isoform X1 [KO:K01738] [EC:2.5.1.47]
102612737  cysteine synthase isoform X2 [KO:K01738] [EC:2.5.1.47]
102625983  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
102611272  bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like isoform X1 [KO:K01738] [EC:2.5.1.47]
102609716  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
127901209  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial-like [KO:K13034] [EC:2.5.1.47 4.4.1.9]
102608399  cystathionine beta-lyase, chloroplastic isoform X1 [KO:K01760] [EC:4.4.1.13]
102628438  selenocysteine methyltransferase [KO:K00547] [EC:2.1.1.10]
102614076  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
102618286  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
102616845  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
102631249  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [KO:K00549] [EC:2.1.1.14]
102606650  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1-like [KO:K00549] [EC:2.1.1.14]
102618655  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
102622739  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
102607487  S-adenosylmethionine synthase 3 [KO:K00789] [EC:2.5.1.6]
102609114  S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
102578065  SAMDC; S-adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
102625258  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
102621523  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
102608436  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
102607262  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
102621922  spermine synthase isoform X1 [KO:K00797] [EC:2.5.1.16]
102628833  spermidine synthase 1-like [KO:K00797] [EC:2.5.1.16]
102621359  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
102609096  nicotianamine synthase-like [KO:K05953] [EC:2.5.1.43]
102608515  nicotianamine synthase-like [KO:K05953] [EC:2.5.1.43]
102609958  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
102629213  5'-methylthioadenosine nucleosidase [KO:K01244] [EC:3.2.2.16]
102629613  methylthioribose kinase isoform X1 [KO:K00899] [EC:2.7.1.100]
102610062  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
102631398  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
102624829  acireductone dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
102625112  acireductone dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
102621176  uncharacterized protein LOC102621176 [KO:K23977] [EC:2.6.1.117]
102617885  probable aminotransferase TAT2 isoform X1 [KO:K00815] [EC:2.6.1.5]
102611153  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
102612119  nicotianamine aminotransferase 1-like [KO:K00815] [EC:2.6.1.5]
102612722  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
102612421  nicotianamine aminotransferase 1-like isoform X1 [KO:K00815] [EC:2.6.1.5]
102619270  LOW QUALITY PROTEIN: probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
102629708  aromatic aminotransferase ISS1 [KO:K00837] [EC:2.6.1.-]
102609475  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
102616428  DNA (cytosine-5)-methyltransferase 1-like [KO:K00558] [EC:2.1.1.37]
102618592  DNA (cytosine-5)-methyltransferase CMT3-like [KO:K00558] [EC:2.1.1.37]
102617543  putative DNA (cytosine-5)-methyltransferase CMT1 isoform X1 [KO:K00558] [EC:2.1.1.37]
102609368  DNA (cytosine-5)-methyltransferase CMT2-like isoform X1 [KO:K00558] [EC:2.1.1.37]
102607628  PWWP domain-containing protein 1-like isoform X1 [KO:K17398] [EC:2.1.1.37]
102617645  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
102614629  acs1; 1-aminocyclopropane-1-carboxylate synthase-like [KO:K20772] [EC:4.4.1.14]
102621630  acs-1; 1-aminocyclopropane-1-carboxylate synthase 1-like [KO:K20772] [EC:4.4.1.14]
127901526  1-aminocyclopropane-1-carboxylate synthase 1-like [KO:K20772] [EC:4.4.1.14]
102611477  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
102614668  1-aminocyclopropane-1-carboxylate synthase 3-like [KO:K01762] [EC:4.4.1.14]
102612741  1-aminocyclopropane-1-carboxylate synthase 8 [KO:K01762] [EC:4.4.1.14]
102577997  aco-1; ACC oxidase [KO:K05933] [EC:1.14.17.4]
102611528  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
102622142  1-aminocyclopropane-1-carboxylate oxidase 5 [KO:K05933] [EC:1.14.17.4]
102609002  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
102620870  aspartokinase 2, chloroplastic isoform X1 [KO:K00928] [EC:2.7.2.4]
102628536  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [KO:K12524] [EC:2.7.2.4 1.1.1.3]
102608194  uncharacterized protein LOC102608194 [KO:K00133] [EC:1.2.1.11]
102621879  cystathionine gamma-synthase 1, chloroplastic [KO:K01739] [EC:2.5.1.48]
102614378  branched-chain amino acid aminotransferase 2, chloroplastic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
102628273  branched-chain-amino-acid aminotransferase 6-like isoform X3 [KO:K00826] [EC:2.6.1.42]
102628935  branched-chain-amino-acid aminotransferase 6-like isoform X1 [KO:K00826] [EC:2.6.1.42]
102614136  branched-chain-amino-acid aminotransferase 2, chloroplastic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
102614611  branched-chain-amino-acid aminotransferase 2, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
102627781  branched-chain-amino-acid aminotransferase 6-like isoform X1 [KO:K00826] [EC:2.6.1.42]
102618447  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial isoform X1 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
102615236  alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
102610891  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
102626171  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
102622558  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
102620904  aspartate aminotransferase, cytoplasmic-like isoform X1 [KO:K14454] [EC:2.6.1.1]
102621670  aspartate aminotransferase, cytoplasmic isoform X1 [KO:K14454] [EC:2.6.1.1]
102617696  aspartate aminotransferase, mitochondrial-like isoform X1 [KO:K14455] [EC:2.6.1.1]
102625863  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
102617301  aspartate aminotransferase, chloroplastic isoform X2 [KO:K00811] [EC:2.6.1.1]
102624877  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
102614633  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
102611683  putative D-cysteine desulfhydrase 1, mitochondrial isoform X1 [KO:K05396] [EC:4.4.1.15]
102626421  D-cysteine desulfhydrase 2, mitochondrial isoform X1 [KO:K05396] [EC:4.4.1.15]
102628307  L-cysteine desulfhydrase [KO:K22207] [EC:4.4.1.28]
102626410  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
102615934  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
102577998  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
102608370  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
102628532  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
102617795  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102622394  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
102611226  S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent), chloroplastic isoform X1 [KO:K22846] [EC:2.5.1.144]
102609596  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
102626787  D-3-phosphoglycerate dehydrogenase 2, chloroplastic-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
102621273  D-3-phosphoglycerate dehydrogenase 3, chloroplastic-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
102627208  phosphoserine aminotransferase 2, chloroplastic-like [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
cit00010  Glycolysis / Gluconeogenesis
cit00250  Alanine, aspartate and glutamate metabolism
cit00260  Glycine, serine and threonine metabolism
cit00290  Valine, leucine and isoleucine biosynthesis
cit00430  Taurine and hypotaurine metabolism
cit00480  Glutathione metabolism
cit00620  Pyruvate metabolism
cit00640  Propanoate metabolism
cit00770  Pantothenate and CoA biosynthesis
cit00900  Terpenoid backbone biosynthesis
cit00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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