KEGG   PATHWAY: cix01100
Entry
cix01100                    Pathway                                
Name
Metabolic pathways - Citrobacter sp. XT1-2-2
Class
Pathway map
cix01100  Metabolic pathways
cix01100

Module
cix_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cix01100]
cix_M00002  Glycolysis, core module involving three-carbon compounds [PATH:cix01100]
cix_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cix01100]
cix_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cix01100]
cix_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cix01100]
cix_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cix01100]
cix_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cix01100]
cix_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cix01100]
cix_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cix01100]
cix_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cix01100]
cix_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cix01100]
cix_M00012  Glyoxylate cycle [PATH:cix01100]
cix_M00015  Proline biosynthesis, glutamate => proline [PATH:cix01100]
cix_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:cix01100]
cix_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:cix01100]
cix_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cix01100]
cix_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cix01100]
cix_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:cix01100]
cix_M00021  Cysteine biosynthesis, serine => cysteine [PATH:cix01100]
cix_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cix01100]
cix_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:cix01100]
cix_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:cix01100]
cix_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:cix01100]
cix_M00026  Histidine biosynthesis, PRPP => histidine [PATH:cix01100]
cix_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:cix01100]
cix_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:cix01100]
cix_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:cix01100]
cix_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cix01100]
cix_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cix01100]
cix_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cix01100]
cix_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cix01100]
cix_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cix01100]
cix_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:cix01100]
cix_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cix01100]
cix_M00063  CMP-KDO biosynthesis [PATH:cix01100]
cix_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:cix01100]
cix_M00082  Fatty acid biosynthesis, initiation [PATH:cix01100]
cix_M00083  Fatty acid biosynthesis, elongation [PATH:cix01100]
cix_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:cix01100]
cix_M00087  beta-Oxidation [PATH:cix01100]
cix_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:cix01100]
cix_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:cix01100]
cix_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cix01100]
cix_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:cix01100]
cix_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:cix01100]
cix_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:cix01100]
cix_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:cix01100]
cix_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:cix01100]
cix_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:cix01100]
cix_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:cix01100]
cix_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:cix01100]
cix_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:cix01100]
cix_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cix01100]
cix_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:cix01100]
cix_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:cix01100]
cix_M00136  GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:cix01100]
cix_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:cix01100]
cix_M00149  Succinate dehydrogenase, prokaryotes [PATH:cix01100]
cix_M00150  Fumarate reductase, prokaryotes [PATH:cix01100]
cix_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:cix01100]
cix_M00168  CAM (Crassulacean acid metabolism), dark [PATH:cix01100]
cix_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:cix01100]
cix_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cix01100]
cix_M00364  C10-C20 isoprenoid biosynthesis, bacteria [PATH:cix01100]
cix_M00417  Cytochrome o ubiquinol oxidase [PATH:cix01100]
cix_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cix01100]
cix_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:cix01100]
cix_M00545  Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:cix01100]
cix_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cix01100]
cix_M00550  Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:cix01100]
cix_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:cix01100]
cix_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cix01100]
cix_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:cix01100]
cix_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:cix01100]
cix_M00621  Glycine cleavage system [PATH:cix01100]
cix_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cix01100]
cix_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:cix01100]
cix_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:cix01100]
cix_M00793  dTDP-L-rhamnose biosynthesis [PATH:cix01100]
cix_M00844  Arginine biosynthesis, ornithine => arginine [PATH:cix01100]
cix_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:cix01100]
cix_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cix01100]
cix_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:cix01100]
cix_M00879  Arginine succinyltransferase pathway, arginine => glutamate [PATH:cix01100]
cix_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cix01100]
cix_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:cix01100]
cix_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:cix01100]
cix_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:cix01100]
cix_M00924  Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:cix01100]
cix_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cix01100]
cix_M00956  Lysine degradation, bacteria, L-lysine => succinate [PATH:cix01100]
cix_M00970  Proline degradation, proline => glutamate [PATH:cix01100]
Organism
Citrobacter sp. XT1-2-2 [GN:cix]
Related
pathway
cix00010  Glycolysis / Gluconeogenesis
cix00020  Citrate cycle (TCA cycle)
cix00030  Pentose phosphate pathway
cix00040  Pentose and glucuronate interconversions
cix00051  Fructose and mannose metabolism
cix00052  Galactose metabolism
cix00053  Ascorbate and aldarate metabolism
cix00061  Fatty acid biosynthesis
cix00071  Fatty acid degradation
cix00130  Ubiquinone and other terpenoid-quinone biosynthesis
cix00190  Oxidative phosphorylation
cix00220  Arginine biosynthesis
cix00230  Purine metabolism
cix00240  Pyrimidine metabolism
cix00250  Alanine, aspartate and glutamate metabolism
cix00260  Glycine, serine and threonine metabolism
cix00261  Monobactam biosynthesis
cix00270  Cysteine and methionine metabolism
cix00280  Valine, leucine and isoleucine degradation
cix00290  Valine, leucine and isoleucine biosynthesis
cix00300  Lysine biosynthesis
cix00310  Lysine degradation
cix00330  Arginine and proline metabolism
cix00332  Carbapenem biosynthesis
cix00340  Histidine metabolism
cix00350  Tyrosine metabolism
cix00360  Phenylalanine metabolism
cix00361  Chlorocyclohexane and chlorobenzene degradation
cix00362  Benzoate degradation
cix00364  Fluorobenzoate degradation
cix00380  Tryptophan metabolism
cix00400  Phenylalanine, tyrosine and tryptophan biosynthesis
cix00401  Novobiocin biosynthesis
cix00410  beta-Alanine metabolism
cix00430  Taurine and hypotaurine metabolism
cix00440  Phosphonate and phosphinate metabolism
cix00450  Selenocompound metabolism
cix00460  Cyanoamino acid metabolism
cix00470  D-Amino acid metabolism
cix00480  Glutathione metabolism
cix00500  Starch and sucrose metabolism
cix00511  Other glycan degradation
cix00520  Amino sugar and nucleotide sugar metabolism
cix00521  Streptomycin biosynthesis
cix00523  Polyketide sugar unit biosynthesis
cix00525  Acarbose and validamycin biosynthesis
cix00540  Lipopolysaccharide biosynthesis
cix00541  O-Antigen nucleotide sugar biosynthesis
cix00542  O-Antigen repeat unit biosynthesis
cix00543  Exopolysaccharide biosynthesis
cix00550  Peptidoglycan biosynthesis
cix00552  Teichoic acid biosynthesis
cix00561  Glycerolipid metabolism
cix00562  Inositol phosphate metabolism
cix00564  Glycerophospholipid metabolism
cix00565  Ether lipid metabolism
cix00592  alpha-Linolenic acid metabolism
cix00600  Sphingolipid metabolism
cix00620  Pyruvate metabolism
cix00621  Dioxin degradation
cix00622  Xylene degradation
cix00623  Toluene degradation
cix00625  Chloroalkane and chloroalkene degradation
cix00626  Naphthalene degradation
cix00627  Aminobenzoate degradation
cix00630  Glyoxylate and dicarboxylate metabolism
cix00633  Nitrotoluene degradation
cix00640  Propanoate metabolism
cix00650  Butanoate metabolism
cix00660  C5-Branched dibasic acid metabolism
cix00670  One carbon pool by folate
cix00680  Methane metabolism
cix00730  Thiamine metabolism
cix00740  Riboflavin metabolism
cix00750  Vitamin B6 metabolism
cix00760  Nicotinate and nicotinamide metabolism
cix00770  Pantothenate and CoA biosynthesis
cix00780  Biotin metabolism
cix00785  Lipoic acid metabolism
cix00790  Folate biosynthesis
cix00791  Atrazine degradation
cix00860  Porphyrin metabolism
cix00900  Terpenoid backbone biosynthesis
cix00907  Pinene, camphor and geraniol degradation
cix00910  Nitrogen metabolism
cix00920  Sulfur metabolism
cix00930  Caprolactam degradation
cix00946  Degradation of flavonoids
cix00999  Biosynthesis of various plant secondary metabolites
cix01040  Biosynthesis of unsaturated fatty acids
cix01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
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