PATHWAY: cko01100 Help Entry cko01100                    Pathway                                 Name Metabolic pathways - Citrobacter koseri Class BRITE hierarchy Pathway map cko01100   Metabolic pathways Module cko_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cko01100] cko_M00002   Glycolysis, core module involving three-carbon compounds [PATH:cko01100] cko_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cko01100] cko_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cko01100] cko_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:cko01100] cko_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cko01100] cko_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cko01100] cko_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:cko01100] cko_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:cko01100] cko_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cko01100] cko_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cko01100] cko_M00012   Glyoxylate cycle [PATH:cko01100] cko_M00015   Proline biosynthesis, glutamate => proline [PATH:cko01100] cko_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:cko01100] cko_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:cko01100] cko_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cko01100] cko_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cko01100] cko_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:cko01100] cko_M00021   Cysteine biosynthesis, serine => cysteine [PATH:cko01100] cko_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cko01100] cko_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:cko01100] cko_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:cko01100] cko_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:cko01100] cko_M00026   Histidine biosynthesis, PRPP => histidine [PATH:cko01100] cko_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:cko01100] cko_M00034   Methionine salvage pathway [PATH:cko01100] cko_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:cko01100] cko_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:cko01100] cko_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cko01100] cko_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cko01100] cko_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cko01100] cko_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cko01100] cko_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cko01100] cko_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:cko01100] cko_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:cko01100] cko_M00063   CMP-KDO biosynthesis [PATH:cko01100] cko_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:cko01100] cko_M00082   Fatty acid biosynthesis, initiation [PATH:cko01100] cko_M00083   Fatty acid biosynthesis, elongation [PATH:cko01100] cko_M00087   beta-Oxidation [PATH:cko01100] cko_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:cko01100] cko_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:cko01100] cko_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cko01100] cko_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:cko01100] cko_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:cko01100] cko_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:cko01100] cko_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:cko01100] cko_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:cko01100] cko_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:cko01100] cko_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:cko01100] cko_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:cko01100] cko_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:cko01100] cko_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cko01100] cko_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:cko01100] cko_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:cko01100] cko_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:cko01100] cko_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:cko01100] cko_M00149   Succinate dehydrogenase, prokaryotes [PATH:cko01100] cko_M00150   Fumarate reductase, prokaryotes [PATH:cko01100] cko_M00151   Cytochrome bc1 complex respiratory unit [PATH:cko01100] cko_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:cko01100] cko_M00168   CAM (Crassulacean acid metabolism), dark [PATH:cko01100] cko_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:cko01100] cko_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cko01100] cko_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:cko01100] cko_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:cko01100] cko_M00417   Cytochrome o ubiquinol oxidase [PATH:cko01100] cko_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cko01100] cko_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:cko01100] cko_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:cko01100] cko_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cko01100] cko_M00550   Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:cko01100] cko_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:cko01100] cko_M00555   Betaine biosynthesis, choline => betaine [PATH:cko01100] cko_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cko01100] cko_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:cko01100] cko_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:cko01100] cko_M00621   Glycine cleavage system [PATH:cko01100] cko_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:cko01100] cko_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:cko01100] cko_M00844   Arginine biosynthesis, ornithine => arginine [PATH:cko01100] cko_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:cko01100] cko_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cko01100] cko_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:cko01100] cko_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:cko01100] cko_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cko01100] cko_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:cko01100] cko_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:cko01100] cko_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:cko01100] cko_M00918   Aerobactin biosynthesis, lysine => aerobactin [PATH:cko01100] cko_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:cko01100] cko_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cko01100] cko_M00956   Lysine degradation, bacteria, L-lysine => succinate [PATH:cko01100] cko_M00970   Proline degradation, proline => glutamate [PATH:cko01100] Organism Citrobacter koseri [GN:cko] Related pathway cko00010   Glycolysis / Gluconeogenesis cko00020   Citrate cycle (TCA cycle) cko00030   Pentose phosphate pathway cko00040   Pentose and glucuronate interconversions cko00051   Fructose and mannose metabolism cko00052   Galactose metabolism cko00053   Ascorbate and aldarate metabolism cko00061   Fatty acid biosynthesis cko00071   Fatty acid degradation cko00074   Mycolic acid biosynthesis cko00130   Ubiquinone and other terpenoid-quinone biosynthesis cko00190   Oxidative phosphorylation cko00220   Arginine biosynthesis cko00230   Purine metabolism cko00240   Pyrimidine metabolism cko00250   Alanine, aspartate and glutamate metabolism cko00260   Glycine, serine and threonine metabolism cko00261   Monobactam biosynthesis cko00270   Cysteine and methionine metabolism cko00280   Valine, leucine and isoleucine degradation cko00290   Valine, leucine and isoleucine biosynthesis cko00300   Lysine biosynthesis cko00310   Lysine degradation cko00330   Arginine and proline metabolism cko00332   Carbapenem biosynthesis cko00340   Histidine metabolism cko00350   Tyrosine metabolism cko00360   Phenylalanine metabolism cko00361   Chlorocyclohexane and chlorobenzene degradation cko00362   Benzoate degradation cko00364   Fluorobenzoate degradation cko00380   Tryptophan metabolism cko00400   Phenylalanine, tyrosine and tryptophan biosynthesis cko00401   Novobiocin biosynthesis cko00410   beta-Alanine metabolism cko00430   Taurine and hypotaurine metabolism cko00440   Phosphonate and phosphinate metabolism cko00450   Selenocompound metabolism cko00460   Cyanoamino acid metabolism cko00470   D-Amino acid metabolism cko00480   Glutathione metabolism cko00500   Starch and sucrose metabolism cko00511   Other glycan degradation cko00520   Amino sugar and nucleotide sugar metabolism cko00521   Streptomycin biosynthesis cko00523   Polyketide sugar unit biosynthesis cko00525   Acarbose and validamycin biosynthesis cko00540   Lipopolysaccharide biosynthesis cko00541   O-Antigen nucleotide sugar biosynthesis cko00542   O-Antigen repeat unit biosynthesis cko00543   Exopolysaccharide biosynthesis cko00550   Peptidoglycan biosynthesis cko00552   Teichoic acid biosynthesis cko00561   Glycerolipid metabolism cko00562   Inositol phosphate metabolism cko00564   Glycerophospholipid metabolism cko00565   Ether lipid metabolism cko00592   alpha-Linolenic acid metabolism cko00620   Pyruvate metabolism cko00623   Toluene degradation cko00625   Chloroalkane and chloroalkene degradation cko00626   Naphthalene degradation cko00627   Aminobenzoate degradation cko00630   Glyoxylate and dicarboxylate metabolism cko00633   Nitrotoluene degradation cko00640   Propanoate metabolism cko00650   Butanoate metabolism cko00660   C5-Branched dibasic acid metabolism cko00670   One carbon pool by folate cko00680   Methane metabolism cko00710   Carbon fixation by Calvin cycle cko00720   Other carbon fixation pathways cko00730   Thiamine metabolism cko00740   Riboflavin metabolism cko00750   Vitamin B6 metabolism cko00760   Nicotinate and nicotinamide metabolism cko00770   Pantothenate and CoA biosynthesis cko00780   Biotin metabolism cko00785   Lipoic acid metabolism cko00790   Folate biosynthesis cko00860   Porphyrin metabolism cko00900   Terpenoid backbone biosynthesis cko00907   Pinene, camphor and geraniol degradation cko00910   Nitrogen metabolism cko00920   Sulfur metabolism cko00930   Caprolactam degradation cko00946   Degradation of flavonoids cko00997   Biosynthesis of various other secondary metabolites cko00999   Biosynthesis of various plant secondary metabolites cko01040   Biosynthesis of unsaturated fatty acids cko01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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