KEGG   PATHWAY: comm00020
Entry
comm00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Commensalibacter melissae ESL0284
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
comm00020  Citrate cycle (TCA cycle)
comm00020

Module
comm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:comm00020]
comm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:comm00020]
comm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:comm00020]
comm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:comm00020]
comm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:comm00020]
Other DBs
GO: 0006099
Organism
Commensalibacter melissae ESL0284 [GN:comm]
Gene
GN303_06955  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GN303_08280  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GN303_04880  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
GN303_08100  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GN303_08095  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GN303_08090  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GN303_06940  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
GN303_08125  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GN303_08115  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GN303_08120  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
GN303_06045  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GN303_03480  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
GN303_02065  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GN303_00515  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
comm00010  Glycolysis / Gluconeogenesis
comm00053  Ascorbate and aldarate metabolism
comm00061  Fatty acid biosynthesis
comm00190  Oxidative phosphorylation
comm00220  Arginine biosynthesis
comm00250  Alanine, aspartate and glutamate metabolism
comm00280  Valine, leucine and isoleucine degradation
comm00350  Tyrosine metabolism
comm00470  D-Amino acid metabolism
comm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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