PATHWAY: csed01100 Help Entry csed01100                   Pathway                                 Name Metabolic pathways - Citrobacter sedlakii Class BRITE hierarchy Pathway map csed01100   Metabolic pathways Module csed_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:csed01100] csed_M00002   Glycolysis, core module involving three-carbon compounds [PATH:csed01100] csed_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csed01100] csed_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:csed01100] csed_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:csed01100] csed_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:csed01100] csed_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:csed01100] csed_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:csed01100] csed_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:csed01100] csed_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csed01100] csed_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csed01100] csed_M00012   Glyoxylate cycle [PATH:csed01100] csed_M00015   Proline biosynthesis, glutamate => proline [PATH:csed01100] csed_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:csed01100] csed_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:csed01100] csed_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:csed01100] csed_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:csed01100] csed_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:csed01100] csed_M00021   Cysteine biosynthesis, serine => cysteine [PATH:csed01100] csed_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:csed01100] csed_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:csed01100] csed_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:csed01100] csed_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:csed01100] csed_M00026   Histidine biosynthesis, PRPP => histidine [PATH:csed01100] csed_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:csed01100] csed_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:csed01100] csed_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:csed01100] csed_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:csed01100] csed_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:csed01100] csed_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:csed01100] csed_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:csed01100] csed_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:csed01100] csed_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:csed01100] csed_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:csed01100] csed_M00063   CMP-KDO biosynthesis [PATH:csed01100] csed_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:csed01100] csed_M00082   Fatty acid biosynthesis, initiation [PATH:csed01100] csed_M00083   Fatty acid biosynthesis, elongation [PATH:csed01100] csed_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:csed01100] csed_M00087   beta-Oxidation [PATH:csed01100] csed_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:csed01100] csed_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:csed01100] csed_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:csed01100] csed_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:csed01100] csed_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:csed01100] csed_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:csed01100] csed_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:csed01100] csed_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:csed01100] csed_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:csed01100] csed_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:csed01100] csed_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:csed01100] csed_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:csed01100] csed_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:csed01100] csed_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:csed01100] csed_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:csed01100] csed_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:csed01100] csed_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:csed01100] csed_M00149   Succinate dehydrogenase, prokaryotes [PATH:csed01100] csed_M00150   Fumarate reductase, prokaryotes [PATH:csed01100] csed_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:csed01100] csed_M00168   CAM (Crassulacean acid metabolism), dark [PATH:csed01100] csed_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:csed01100] csed_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csed01100] csed_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:csed01100] csed_M00417   Cytochrome o ubiquinol oxidase [PATH:csed01100] csed_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:csed01100] csed_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:csed01100] csed_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:csed01100] csed_M00545   Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:csed01100] csed_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:csed01100] csed_M00550   Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:csed01100] csed_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:csed01100] csed_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:csed01100] csed_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:csed01100] csed_M00555   Betaine biosynthesis, choline => betaine [PATH:csed01100] csed_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:csed01100] csed_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:csed01100] csed_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:csed01100] csed_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:csed01100] csed_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:csed01100] csed_M00621   Glycine cleavage system [PATH:csed01100] csed_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:csed01100] csed_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:csed01100] csed_M00844   Arginine biosynthesis, ornithine => arginine [PATH:csed01100] csed_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:csed01100] csed_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:csed01100] csed_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:csed01100] csed_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:csed01100] csed_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:csed01100] csed_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:csed01100] csed_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:csed01100] csed_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:csed01100] csed_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:csed01100] csed_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:csed01100] csed_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:csed01100] csed_M00970   Proline degradation, proline => glutamate [PATH:csed01100] Organism Citrobacter sedlakii [GN:csed] Related pathway csed00010   Glycolysis / Gluconeogenesis csed00020   Citrate cycle (TCA cycle) csed00030   Pentose phosphate pathway csed00040   Pentose and glucuronate interconversions csed00051   Fructose and mannose metabolism csed00052   Galactose metabolism csed00053   Ascorbate and aldarate metabolism csed00061   Fatty acid biosynthesis csed00071   Fatty acid degradation csed00130   Ubiquinone and other terpenoid-quinone biosynthesis csed00190   Oxidative phosphorylation csed00220   Arginine biosynthesis csed00230   Purine metabolism csed00240   Pyrimidine metabolism csed00250   Alanine, aspartate and glutamate metabolism csed00260   Glycine, serine and threonine metabolism csed00261   Monobactam biosynthesis csed00270   Cysteine and methionine metabolism csed00280   Valine, leucine and isoleucine degradation csed00290   Valine, leucine and isoleucine biosynthesis csed00300   Lysine biosynthesis csed00310   Lysine degradation csed00330   Arginine and proline metabolism csed00332   Carbapenem biosynthesis csed00340   Histidine metabolism csed00350   Tyrosine metabolism csed00360   Phenylalanine metabolism csed00361   Chlorocyclohexane and chlorobenzene degradation csed00362   Benzoate degradation csed00364   Fluorobenzoate degradation csed00380   Tryptophan metabolism csed00400   Phenylalanine, tyrosine and tryptophan biosynthesis csed00401   Novobiocin biosynthesis csed00410   beta-Alanine metabolism csed00430   Taurine and hypotaurine metabolism csed00440   Phosphonate and phosphinate metabolism csed00450   Selenocompound metabolism csed00460   Cyanoamino acid metabolism csed00470   D-Amino acid metabolism csed00480   Glutathione metabolism csed00500   Starch and sucrose metabolism csed00511   Other glycan degradation csed00520   Amino sugar and nucleotide sugar metabolism csed00521   Streptomycin biosynthesis csed00523   Polyketide sugar unit biosynthesis csed00525   Acarbose and validamycin biosynthesis csed00540   Lipopolysaccharide biosynthesis csed00541   O-Antigen nucleotide sugar biosynthesis csed00542   O-Antigen repeat unit biosynthesis csed00543   Exopolysaccharide biosynthesis csed00550   Peptidoglycan biosynthesis csed00552   Teichoic acid biosynthesis csed00561   Glycerolipid metabolism csed00562   Inositol phosphate metabolism csed00564   Glycerophospholipid metabolism csed00565   Ether lipid metabolism csed00592   alpha-Linolenic acid metabolism csed00600   Sphingolipid metabolism csed00620   Pyruvate metabolism csed00621   Dioxin degradation csed00622   Xylene degradation csed00623   Toluene degradation csed00625   Chloroalkane and chloroalkene degradation csed00626   Naphthalene degradation csed00627   Aminobenzoate degradation csed00630   Glyoxylate and dicarboxylate metabolism csed00633   Nitrotoluene degradation csed00640   Propanoate metabolism csed00650   Butanoate metabolism csed00660   C5-Branched dibasic acid metabolism csed00670   One carbon pool by folate csed00680   Methane metabolism csed00730   Thiamine metabolism csed00740   Riboflavin metabolism csed00750   Vitamin B6 metabolism csed00760   Nicotinate and nicotinamide metabolism csed00770   Pantothenate and CoA biosynthesis csed00780   Biotin metabolism csed00785   Lipoic acid metabolism csed00790   Folate biosynthesis csed00860   Porphyrin metabolism csed00900   Terpenoid backbone biosynthesis csed00907   Pinene, camphor and geraniol degradation csed00910   Nitrogen metabolism csed00920   Sulfur metabolism csed00930   Caprolactam degradation csed00946   Degradation of flavonoids csed00999   Biosynthesis of various plant secondary metabolites csed01040   Biosynthesis of unsaturated fatty acids csed01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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