KEGG   PATHWAY: dnx04137
Entry
dnx04137                    Pathway                                
Name
Mitophagy - animal - Diuraphis noxia (Russian wheat aphid)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
dnx04137  Mitophagy - animal
dnx04137

Other DBs
GO: 0000422
Organism
Diuraphis noxia (Russian wheat aphid) [GN:dnx]
Gene
107170068  serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
107171692  mitochondrial import receptor subunit TOM7 homolog isoform X1 [KO:K17771]
107169434  uncharacterized protein LOC107169434 [KO:K11518]
107170015  mitochondrial import receptor subunit TOM40 homolog 2-like [KO:K11518]
107171448  mitochondrial import receptor subunit TOM70-like [KO:K17768]
107171531  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
107164694  E3 ubiquitin-protein ligase MARCH5-like [KO:K10660] [EC:2.3.2.27]
107166677  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
107172847  E3 ubiquitin-protein ligase AMFR-like [KO:K10636] [EC:2.3.2.36]
107164187  E3 ubiquitin-protein ligase Siah1 [KO:K04506] [EC:2.3.2.27]
107169294  uncharacterized protein LOC107169294 [KO:K04506] [EC:2.3.2.27]
107161639  probable E3 ubiquitin-protein ligase sinah [KO:K04506] [EC:2.3.2.27]
107170800  protein ariadne-1 [KO:K11968] [EC:2.3.2.31]
107168084  transmembrane GTPase Marf-like [KO:K06030] [EC:3.6.5.-]
107165229  mitochondrial Rho GTPase isoform X1 [KO:K07870] [EC:3.6.5.-]
107166069  ubiquitin-60S ribosomal protein L40 [KO:K02927]
107167928  ubiquitin-like [KO:K02977]
107166021  ubiquitin-like [KO:K02977]
107165510  serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
107167856  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
107167550  beclin-1-like protein [KO:K08334]
107174073  ubiquitin carboxyl-terminal hydrolase 30 homolog isoform X1 [KO:K11851] [EC:3.4.19.12]
107163368  serine/threonine-protein phosphatase PGAM5, mitochondrial-like [KO:K15637] [EC:3.1.3.16]
107167750  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
107170159  casein kinase II subunit beta [KO:K03115]
107169629  casein kinase II subunit beta-like [KO:K03115]
107167712  tyrosine-protein kinase Src64B [KO:K05704] [EC:2.7.10.2]
107162282  FUN14 domain-containing protein 2-like [KO:K17986]
107168532  FUN14 domain-containing protein 1-like isoform X1 [KO:K17986]
107167260  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
107162233  peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
107165053  sorting and assembly machinery component 50 homolog B-like [KO:K07277]
107161436  sorting and assembly machinery component 50 homolog [KO:K07277]
107170198  prohibitin-2 isoform X1 [KO:K17081]
107163538  metaxin-1 [KO:K17776]
107172977  metaxin-2 [KO:K17776]
107173884  eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
107161833  activating transcription factor of chaperone [KO:K04374]
107172095  stress-activated protein kinase JNK isoform X1 [KO:K04440] [EC:2.7.11.24]
107166782  transcription factor AP-1 [KO:K04448]
107173957  GTPase HRas [KO:K07827]
107166538  ras-related protein M-Ras-like [KO:K07831]
107173979  ras-like protein 2 [KO:K07830]
107162645  hypoxia-inducible factor 1-alpha-like [KO:K08268]
107172567  tumor protein 63-like [KO:K04451]
107165145  forkhead box protein O [KO:K09408]
107164846  rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
107164901  ras-related protein Rab-5C [KO:K07889]
107167297  protein SAND isoform X1 [KO:K20195]
107170118  vacuolar fusion protein CCZ1 homolog [KO:K27045]
107166881  LOW QUALITY PROTEIN: ras-related protein Rab-7a [KO:K07897]
107164178  TBC1 domain family member 15-like isoform X1 [KO:K20168]
107163416  mitochondrial fission 1 protein [KO:K17969]
107164744  autophagy-related protein 9A [KO:K17907]
107170746  dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
107162868  transitional endoplasmic reticulum ATPase TER94 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
dnx04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

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