KEGG   PATHWAY: dpub00010
Entry
dpub00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Dryobates pubescens (Downy woodpecker)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dpub00010  Glycolysis / Gluconeogenesis
dpub00010

Module
dpub_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:dpub00010]
dpub_M00002  Glycolysis, core module involving three-carbon compounds [PATH:dpub00010]
dpub_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dpub00010]
dpub_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dpub00010]
Other DBs
GO: 0006096 0006094
Organism
Dryobates pubescens (Downy woodpecker) [GN:dpub]
Gene
104298688  HK1; hexokinase-1 [KO:K00844] [EC:2.7.1.1]
104298689  HKDC1; putative hexokinase HKDC1 [KO:K00844] [EC:2.7.1.1]
104303992  HK3; hexokinase-3 [KO:K00844] [EC:2.7.1.1]
104309449  HK2; hexokinase-2 [KO:K00844] [EC:2.7.1.1]
104305272  GCK; glucokinase [KO:K12407] [EC:2.7.1.2]
104302260  GPI; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
104302394  PFKL; LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
104297056  PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
104298784  fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
104298793  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
104302768  ALDOC; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
104304804  ALDOB; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
104299451  TPI1; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
104299496  GAPDH; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
104300141  PGK1; LOW QUALITY PROTEIN: phosphoglycerate kinase 1 [KO:K00927] [EC:2.7.2.3]
104307149  PGAM1; phosphoglycerate mutase 1 [KO:K01834] [EC:5.4.2.11]
104299452  ENO2; gamma-enolase isoform X1 [KO:K01689] [EC:4.2.1.11]
104305865  ENO1; alpha-enolase isoform X1 [KO:K01689] [EC:4.2.1.11]
104299175  ENO4; enolase-like protein ENO4 [KO:K27394] [EC:4.2.1.11]
104297178  PKM; pyruvate kinase PKM isoform X1 [KO:K00873] [EC:2.7.1.40]
104300478  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
104305137  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
104300093  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
104308930  DLD; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
104299431  LDHB; L-lactate dehydrogenase B chain isoform X1 [KO:K00016] [EC:1.1.1.27]
104299773  L-lactate dehydrogenase A chain isoform X1 [KO:K00016] [EC:1.1.1.27]
104305247  alcohol dehydrogenase 1 [KO:K13951] [EC:1.1.1.1]
104305250  alcohol dehydrogenase 1-like [KO:K13951] [EC:1.1.1.1]
104301107  ADH5; alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
104301633  AKR1A1; alcohol dehydrogenase [NADP(+)] [KO:K00002] [EC:1.1.1.2]
104302807  fatty aldehyde dehydrogenase-like [KO:K00128] [EC:1.2.1.3]
104302808  fatty aldehyde dehydrogenase-like [KO:K00128] [EC:1.2.1.3]
104308419  ALDH2; aldehyde dehydrogenase, mitochondrial isoform X1 [KO:K00128] [EC:1.2.1.3]
104299619  ALDH7A1; alpha-aminoadipic semialdehyde dehydrogenase [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
104301538  ALDH9A1; 4-trimethylaminobutyraldehyde dehydrogenase [KO:K00149] [EC:1.2.1.47 1.2.1.3]
104299763  ALDH3B1; LOW QUALITY PROTEIN: aldehyde dehydrogenase family 3 member B1 [KO:K00129] [EC:1.2.1.5]
104299808  aldehyde dehydrogenase family 3 member B1-like [KO:K00129] [EC:1.2.1.5]
104308242  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
104308988  ACSS2; acetyl-coenzyme A synthetase, cytoplasmic [KO:K01895] [EC:6.2.1.1]
104305199  acetyl-coenzyme A synthetase 2-like, mitochondrial [KO:K01895] [EC:6.2.1.1]
104301305  GALM; aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
104308768  PGM1; phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
104296715  PGM2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
104304710  G6PC2; glucose-6-phosphatase 2 isoform X1 [KO:K01084] [EC:3.1.3.9]
104300561  G6PC; glucose-6-phosphatase [KO:K01084] [EC:3.1.3.9]
104305640  G6PC3; glucose-6-phosphatase 3 [KO:K01084] [EC:3.1.3.9]
104306071  ADPGK; ADP-dependent glucokinase [KO:K08074] [EC:2.7.1.147]
104304682  BPGM; bisphosphoglycerate mutase [KO:K01837] [EC:5.4.2.4 5.4.2.11]
104302462  MINPP1; multiple inositol polyphosphate phosphatase 1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
104302647  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dpub00020  Citrate cycle (TCA cycle)
dpub00030  Pentose phosphate pathway
dpub00500  Starch and sucrose metabolism
dpub00620  Pyruvate metabolism
dpub00640  Propanoate metabolism
KO pathway
ko00010   
LinkDB

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