KEGG   PATHWAY: efau00020
Entry
efau00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Enterococcus faecium Aus0085
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
efau00020  Citrate cycle (TCA cycle)
efau00020

Module
efau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:efau00020]
efau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:efau00020]
Other DBs
GO: 0006099
Organism
Enterococcus faecium Aus0085 [GN:efau]
Gene
EFAU085_01255  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EFAU085_01262  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
EFAU085_00435  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EFAU085_01252  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
EFAU085_01253  pdhB; transketolase, pyridine binding domain protein [KO:K00162] [EC:1.2.4.1]
EFAU085_01254  dihydrolipoamide S-succinyltransferase [KO:K00627] [EC:2.3.1.12]
EFAU085_01697  pyruvate flavodoxin oxidoreductase subunit alpha [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
efau00010  Glycolysis / Gluconeogenesis
efau00053  Ascorbate and aldarate metabolism
efau00061  Fatty acid biosynthesis
efau00190  Oxidative phosphorylation
efau00220  Arginine biosynthesis
efau00250  Alanine, aspartate and glutamate metabolism
efau00280  Valine, leucine and isoleucine degradation
efau00350  Tyrosine metabolism
efau00470  D-Amino acid metabolism
efau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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