KEGG   PATHWAY: ere00020
Entry
ere00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Agathobacter rectalis ATCC 33656
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ere00020  Citrate cycle (TCA cycle)
ere00020

Module
ere_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ere00020]
ere_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ere00020]
ere_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ere00020]
Other DBs
GO: 0006099
Organism
Agathobacter rectalis ATCC 33656 [GN:ere]
Gene
EUBREC_1175  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EUBREC_3489  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EUBREC_1970  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
EUBREC_0024  hypothetical protein [KO:K01681] [EC:4.2.1.3]
EUBREC_1968  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
EUBREC_0007  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
EUBREC_0009  fumarate hydratase subunit B [KO:K01678] [EC:4.2.1.2]
EUBREC_2002  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EUBREC_1472  pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ere00010  Glycolysis / Gluconeogenesis
ere00061  Fatty acid biosynthesis
ere00071  Fatty acid degradation
ere00190  Oxidative phosphorylation
ere00220  Arginine biosynthesis
ere00250  Alanine, aspartate and glutamate metabolism
ere00280  Valine, leucine and isoleucine degradation
ere00350  Tyrosine metabolism
ere00470  D-Amino acid metabolism
ere00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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