KEGG   PATHWAY: fox00020
Entry
fox00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fusarium oxysporum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fox00020  Citrate cycle (TCA cycle)
fox00020

Module
fox_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fox00020]
fox_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fox00020]
fox_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fox00020]
fox_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fox00020]
fox_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fox00020]
Other DBs
GO: 0006099
Organism
Fusarium oxysporum [GN:fox]
Gene
FOXG_11291  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
FOXG_01304  2-methylcitrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
FOXG_14733  citrate synthase [KO:K01647] [EC:2.3.3.1]
FOXG_07743  ATP-citrate synthase subunit 2 [KO:K01648] [EC:2.3.3.8]
FOXG_07744  ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
FOXG_03713  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
FOXG_13258  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
FOXG_05055  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
FOXG_06282  isocitrate dehydrogenase [NAD] subunit 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
FOXG_08758  isocitrate dehydrogenase [NAD] subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
FOXG_13932  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
FOXG_12972  oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
FOXG_12971  hypothetical protein [KO:K00658] [EC:2.3.1.61]
FOXG_12890  dihydrolipoyllysine-residue succinyltransferase, E2 component [KO:K00658] [EC:2.3.1.61]
FOXG_08155  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOXG_04676  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
FOXG_04362  succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
FOXG_03787  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
FOXG_04677  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
FOXG_12819  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
FOXG_03785  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
FOXG_01544  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
FOXG_09278  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
FOXG_04307  hypothetical protein [KO:K00236]
FOXG_09077  hypothetical protein [KO:K00236]
FOXG_01074  succinate dehydrogenase (ubiquinone) membrane anchor subunit [KO:K00237]
FOXG_03085  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
FOXG_10533  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
FOXG_10419  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
FOXG_07483  malate dehydrogenase, NAD-dependent [KO:K00026] [EC:1.1.1.37]
FOXG_01733  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FOXG_03418  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FOXG_09447  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FOXG_15628  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FOXG_11462  dihydrolipoamide acetyltransferase component pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fox00010  Glycolysis / Gluconeogenesis
fox00053  Ascorbate and aldarate metabolism
fox00061  Fatty acid biosynthesis
fox00062  Fatty acid elongation
fox00071  Fatty acid degradation
fox00190  Oxidative phosphorylation
fox00220  Arginine biosynthesis
fox00250  Alanine, aspartate and glutamate metabolism
fox00280  Valine, leucine and isoleucine degradation
fox00350  Tyrosine metabolism
fox00470  D-Amino acid metabolism
fox00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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