KEGG   PATHWAY: ghm00020
Entry
ghm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gleimia hominis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ghm00020  Citrate cycle (TCA cycle)
ghm00020

Module
ghm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ghm00020]
ghm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ghm00020]
ghm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ghm00020]
ghm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ghm00020]
Other DBs
GO: 0006099
Organism
Gleimia hominis [GN:ghm]
Gene
CJ187_005090  citrate synthase [KO:K01647] [EC:2.3.3.1]
CJ187_003605  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CJ187_005315  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CJ187_001710  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CJ187_002695  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CJ187_005335  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CJ187_005340  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CJ187_000720  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CJ187_000725  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CJ187_000715  succinate dehydrogenase cytochrome b subunit [KO:K00241]
CJ187_009055  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CJ187_005295  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CJ187_006770  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CJ187_009085  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CJ187_004455  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CJ187_002690  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ghm00010  Glycolysis / Gluconeogenesis
ghm00061  Fatty acid biosynthesis
ghm00190  Oxidative phosphorylation
ghm00220  Arginine biosynthesis
ghm00250  Alanine, aspartate and glutamate metabolism
ghm00280  Valine, leucine and isoleucine degradation
ghm00350  Tyrosine metabolism
ghm00470  D-Amino acid metabolism
ghm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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