KEGG   PATHWAY: haj00020
Entry
haj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haloplanus rubicundus CBA1113
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
haj00020  Citrate cycle (TCA cycle)
haj00020

Module
haj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:haj00020]
haj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:haj00020]
haj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:haj00020]
haj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:haj00020]
Other DBs
GO: 0006099
Organism
Haloplanus rubicundus CBA1113 [GN:haj]
Gene
DU500_06685  citrate synthase [KO:K01647] [EC:2.3.3.1]
DU500_04570  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DU500_04630  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DU500_01050  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
DU500_02415  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DU500_09840  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DU500_09835  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DU500_13420  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DU500_13425  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DU500_05885  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
DU500_16425  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
DU500_16420  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DU500_16410  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DU500_16415  succinate dehydrogenase [KO:K00242]
DU500_15630  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DU500_02885  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DU500_09610  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DU500_02500  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DU500_02495  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DU500_02490  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
DU500_09330  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
DU500_09325  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
haj00010  Glycolysis / Gluconeogenesis
haj00053  Ascorbate and aldarate metabolism
haj00061  Fatty acid biosynthesis
haj00071  Fatty acid degradation
haj00190  Oxidative phosphorylation
haj00220  Arginine biosynthesis
haj00250  Alanine, aspartate and glutamate metabolism
haj00280  Valine, leucine and isoleucine degradation
haj00350  Tyrosine metabolism
haj00470  D-Amino acid metabolism
haj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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