KEGG   PATHWAY: hbh00020
Entry
hbh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas binhaiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hbh00020  Citrate cycle (TCA cycle)
hbh00020

Module
hbh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hbh00020]
hbh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hbh00020]
hbh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hbh00020]
hbh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hbh00020]
Other DBs
GO: 0006099
Organism
Halomonas binhaiensis [GN:hbh]
Gene
E4T21_05570  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E4T21_05385  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
E4T21_02875  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
E4T21_10775  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E4T21_05840  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E4T21_05595  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E4T21_05600  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E4T21_05605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E4T21_05615  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E4T21_05610  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E4T21_05585  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E4T21_05590  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E4T21_05575  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E4T21_05580  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E4T21_10135  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E4T21_08700  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E4T21_04360  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E4T21_04330  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
E4T21_16100  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E4T21_16095  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hbh00010  Glycolysis / Gluconeogenesis
hbh00053  Ascorbate and aldarate metabolism
hbh00061  Fatty acid biosynthesis
hbh00071  Fatty acid degradation
hbh00190  Oxidative phosphorylation
hbh00220  Arginine biosynthesis
hbh00250  Alanine, aspartate and glutamate metabolism
hbh00280  Valine, leucine and isoleucine degradation
hbh00350  Tyrosine metabolism
hbh00470  D-Amino acid metabolism
hbh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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