KEGG   PATHWAY: hpd00020
Entry
hpd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori 51
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpd00020  Citrate cycle (TCA cycle)
hpd00020

Module
hpd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hpd00020]
hpd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpd00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori 51 [GN:hpd]
Gene
KHP_1255  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
KHP_0548  acnB; aconitase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KHP_1254  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KHP_0728  oorA; OorA subunit of the 2-oxoglutarate oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KHP_0727  oorB; OorB subunit of the 2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KHP_0726  oorC; OorC subunit of the 2-oxoglutarate oxidoreductase [KO:K00177] [EC:1.2.7.3]
KHP_0729  oorD; OorD subunit of the 2-oxoglutarate oxidoreductase [KO:K00176] [EC:1.2.7.3]
KHP_0191  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
KHP_0190  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
KHP_0192  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
KHP_1218  fumC; fumarase [KO:K01679] [EC:4.2.1.2]
KHP_0090  mqo; malate:quinone oxireductase [KO:K00116] [EC:1.1.5.4]
KHP_1011  porA; pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
KHP_1012  porB; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
KHP_1009  porG; pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
KHP_1010  porD; pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpd00010  Glycolysis / Gluconeogenesis
hpd00061  Fatty acid biosynthesis
hpd00071  Fatty acid degradation
hpd00190  Oxidative phosphorylation
hpd00220  Arginine biosynthesis
hpd00250  Alanine, aspartate and glutamate metabolism
hpd00280  Valine, leucine and isoleucine degradation
hpd00470  D-Amino acid metabolism
hpd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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