KEGG   PATHWAY: ifn00030
Entry
ifn00030                    Pathway                                
Name
Pentose phosphate pathway - Iocasia fonsfrigidae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ifn00030  Pentose phosphate pathway
ifn00030

Module
ifn_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ifn00030]
ifn_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ifn00030]
ifn_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ifn00030]
ifn_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:ifn00030]
ifn_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ifn00030]
Other DBs
GO: 0006098
Organism
Iocasia fonsfrigidae [GN:ifn]
Gene
GM661_01840  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
GM661_03235  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
GM661_09285  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
GM661_04225  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
GM661_04555  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_04560  transketolase family protein [KO:K00615] [EC:2.2.1.1]
GM661_04615  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_04620  transketolase family protein [KO:K00615] [EC:2.2.1.1]
GM661_06400  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_06405  transketolase family protein [KO:K00615] [EC:2.2.1.1]
GM661_12310  transketolase family protein [KO:K00615] [EC:2.2.1.1]
GM661_12315  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_15965  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_15970  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_16595  transketolase family protein [KO:K00615] [EC:2.2.1.1]
GM661_16600  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_18230  transketolase family protein [KO:K00615] [EC:2.2.1.1]
GM661_18235  transketolase [KO:K00615] [EC:2.2.1.1]
GM661_16855  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
GM661_01265  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
GM661_03195  RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
GM661_17135  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
GM661_02165  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
GM661_03240  3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
GM661_03200  6-phospho-beta-galactosidase [KO:K08094] [EC:5.3.1.27]
GM661_03205  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
GM661_03245  SIS domain-containing protein [KO:K08094] [EC:5.3.1.27]
GM661_00715  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
GM661_07910  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
GM661_08290  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
GM661_03230  ribokinase [KO:K00852] [EC:2.7.1.15]
GM661_04430  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
GM661_04425  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
GM661_02420  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
GM661_16530  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
GM661_04730  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GM661_01665  sugar kinase [KO:K00874] [EC:2.7.1.45]
GM661_04735  sugar kinase [KO:K00874] [EC:2.7.1.45]
GM661_13500  aldehyde ferredoxin oxidoreductase [KO:K03738] [EC:1.2.7.5]
GM661_02070  class II fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
GM661_09420  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
GM661_17325  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
GM661_18265  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
GM661_04130  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
GM661_13965  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
GM661_11170  ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
GM661_17145  diphosphate--fructose-6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ifn00010  Glycolysis / Gluconeogenesis
ifn00040  Pentose and glucuronate interconversions
ifn00052  Galactose metabolism
ifn00230  Purine metabolism
ifn00240  Pyrimidine metabolism
ifn00340  Histidine metabolism
ifn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00030   
LinkDB

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