KEGG   PATHWAY: kphy00020
Entry
kphy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Kibdelosporangium phytohabitans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kphy00020  Citrate cycle (TCA cycle)
kphy00020

Module
kphy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kphy00020]
kphy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kphy00020]
kphy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kphy00020]
kphy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kphy00020]
kphy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kphy00020]
Other DBs
GO: 0006099
Organism
Kibdelosporangium phytohabitans [GN:kphy]
Gene
AOZ06_03400  hypothetical protein [KO:K01647] [EC:2.3.3.1]
AOZ06_22785  excisionase [KO:K01647] [EC:2.3.3.1]
AOZ06_22790  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AOZ06_03285  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
AOZ06_20080  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AOZ06_48900  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AOZ06_47725  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AOZ06_13360  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOZ06_09525  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AOZ06_50175  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AOZ06_50180  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AOZ06_33725  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AOZ06_49105  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AOZ06_33730  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AOZ06_49110  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AOZ06_14010  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AOZ06_48820  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AOZ06_45650  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AOZ06_14015  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AOZ06_48825  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AOZ06_45655  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AOZ06_48810  succinate dehydrogenase [KO:K00241]
AOZ06_45645  succinate dehydrogenase [KO:K00241]
AOZ06_48815  succinate dehydrogenase [KO:K00242]
AOZ06_14515  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AOZ06_06390  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
AOZ06_48955  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AOZ06_45125  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AOZ06_52500  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AOZ06_13215  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AOZ06_13365  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kphy00010  Glycolysis / Gluconeogenesis
kphy00053  Ascorbate and aldarate metabolism
kphy00061  Fatty acid biosynthesis
kphy00071  Fatty acid degradation
kphy00190  Oxidative phosphorylation
kphy00220  Arginine biosynthesis
kphy00250  Alanine, aspartate and glutamate metabolism
kphy00280  Valine, leucine and isoleucine degradation
kphy00350  Tyrosine metabolism
kphy00470  D-Amino acid metabolism
kphy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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