KEGG   PATHWAY: kpo00020
Entry
kpo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella pneumoniae KCTC 2242
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpo00020  Citrate cycle (TCA cycle)
kpo00020

Module
kpo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpo00020]
kpo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpo00020]
kpo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpo00020]
kpo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpo00020]
kpo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpo00020]
Other DBs
GO: 0006099
Organism
Klebsiella pneumoniae KCTC 2242 [GN:kpo]
Gene
KPN2242_05220  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
KPN2242_06485  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPN2242_09490  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KPN2242_03060  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KPN2242_08800  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KPN2242_06510  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KPN2242_06515  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
KPN2242_03040  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPN2242_03735  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPN2242_06525  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
KPN2242_06520  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
KPN2242_06500  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KPN2242_06505  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KPN2242_06490  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
KPN2242_06495  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
KPN2242_00835  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KPN2242_00830  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KPN2242_00825  fumarate reductase subunit C [KO:K00246]
KPN2242_00820  fumarate reductase subunit D [KO:K00247]
KPN2242_10365  fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
KPN2242_10520  fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
KPN2242_10370  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KPN2242_13620  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KPN2242_21250  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KPN2242_16210  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPN2242_10560  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPN2242_21885  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPN2242_14370  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPN2242_03030  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
KPN2242_03035  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
KPN2242_03740  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
KPN2242_10005  putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpo00010  Glycolysis / Gluconeogenesis
kpo00053  Ascorbate and aldarate metabolism
kpo00061  Fatty acid biosynthesis
kpo00071  Fatty acid degradation
kpo00190  Oxidative phosphorylation
kpo00220  Arginine biosynthesis
kpo00250  Alanine, aspartate and glutamate metabolism
kpo00280  Valine, leucine and isoleucine degradation
kpo00350  Tyrosine metabolism
kpo00470  D-Amino acid metabolism
kpo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system