KEGG   PATHWAY: kpr00020
Entry
kpr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpr00020  Citrate cycle (TCA cycle)
kpr00020

Module
kpr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpr00020]
kpr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpr00020]
kpr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpr00020]
kpr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpr00020]
kpr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpr00020]
Other DBs
GO: 0006099
Organism
Klebsiella pneumoniae subsp. rhinoscleromatis SB3432 [GN:kpr]
Gene
KPR_3851  cisY; highly similar to citrate synthase from Salmonella typhimurium (sp [KO:K01647] [EC:2.3.3.1]
KPR_4079  unnamed protein product; similar to citrate synthase from Escherichia coli O150:H5 strain SE15 (tr [KO:K01647] [EC:2.3.3.1]
KPR_2324  acnA; highly similar to aconitate hydratase 1 from Escherichia coli strain K12 (sp [KO:K01681] [EC:4.2.1.3]
KPR_1053  acnB; highly similar to aconitate hydratase 2 from Escherichia coli B171 (tr [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KPR_2189  icdA; hihly similar to isocitrate dehydrogenase [NADP] from Escherichia coli O6 (tr [KO:K00031] [EC:1.1.1.42]
KPR_3846  sucA; highly similar to 2-oxoglutarate dehydrogenase decarboxylase component from Escherichia coli strain UTI89 - UPEC (tr [KO:K00164] [EC:1.2.4.2]
KPR_3845  sucB; highly similar to dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex from Escherichia coli O55:H7 strain CB9615 - EPEC (tr [KO:K00658] [EC:2.3.1.61]
KPR_1049  lpdA; highly similar to dihydrolipoyl dehydrogenase from Escherichia coli strain UTI89 - UPEC (tr [KO:K00382] [EC:1.8.1.4]
KPR_3843  sucD; highly similar to succinyl-CoA ligase [ADP-forming] subunit alpha from Escherichia coli strain UTI89 - UPEC (tr [KO:K01902] [EC:6.2.1.5]
KPR_3844  sucC; highly similar to succinyl-CoA ligase [ADP-forming] subunit beta from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp [KO:K01903] [EC:6.2.1.5]
KPR_3848  sdhA; highly similar to succinate dehydrogenase flavoprotein subunit from Escherichia coli strain UTI89 - UPEC (tr [KO:K00239] [EC:1.3.5.1]
KPR_3847  sdhB; highly similar to succinate dehydrogenase from Escherichia coli O157:H7 (tr [KO:K00240] [EC:1.3.5.1]
KPR_3850  sdhC; highly similar to succinate dehydrogenase, cytochrome b556 subunit from Escherichia coli strain ATCC 33849 - DSM 4235 - NCIB 12045 - K12 - DH1 (tr [KO:K00241]
KPR_3849  sdhD; highly similar to succinate dehydrogenase hydrophobic subunit from Escherichia coli strain UTI89 - UPEC (tr [KO:K00242]
KPR_0532  frdA; highly similar to putative fumarate reductase (anaerobic) catalytic and NAD-flavoprotein subunit from Escherichia coli O7:K1 strain IAI39 - ExPEC (tr [KO:K00244] [EC:1.3.5.1]
KPR_0531  frdB; highly similar to putative fumarate reductase, iron-sulfur protein from Salmonella enterica (tr [KO:K00245] [EC:1.3.5.1]
KPR_0530  frdC; highly similar to fumarate reductase 15 kDa hydrophobic protein from Klebsiella pneumoniae strain 342 (sp [KO:K00246]
KPR_0529  frdD; highly similar to fumarate reductase 13 kDa hydrophobic protein from Klebsiella pneumoniae strain 342 (sp [KO:K00247]
KPR_2765  unnamed protein product; highly similar to C-terminal region of fumarase from Enterobacter cloacae (tr [KO:K01676] [EC:4.2.1.2]
KPR_2827  fumB; highly similar to anaerobic class I fumarate hydratase (fumaraseB) from Escherichia coli O127:H6 strain E2348-69 - EPEC (tr [KO:K01676] [EC:4.2.1.2]
KPR_2826  fumC; highly similar to fumarate hydratase class II from Salmonella typhi (sp [KO:K01679] [EC:4.2.1.2]
KPR_2677  ydhZ; highly similar to putative uncharacterized protein YdhZ from Escherichia coli strain UTI89 - UPEC (tr [KO:K01675] [EC:4.2.1.2]
KPR_4827  mdh; highly similar to malate dehydrogenase from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp [KO:K00024] [EC:1.1.1.37]
KPR_2084  mqo; highly similar to probable malate:quinone oxidoreductase from Escherichia fergusonii strain ATCC 35469 - DSM 13698 - CDC 0568-73 (sp [KO:K00116] [EC:1.1.5.4]
KPR_2755  mqo; highly similar to probable malate:quinone oxidoreductase from Enterobacter sakazakii (sp [KO:K00116] [EC:1.1.5.4]
KPR_3194  pckA; highly similar to phosphoenolpyruvate carboxykinase [ATP] from Shigella sonnei (sp [KO:K01610] [EC:4.1.1.49]
KPR_0695  pckA; highly similar to phosphoenolpyruvate carboxykinase [ATP] from Salmonella typhi (sp [KO:K01610] [EC:4.1.1.49]
KPR_1047  aceE; highly similar to pyruvate dehydrogenase E1 component from Escherichia coli O55:H7 strain CB9615 - EPEC (tr [KO:K00163] [EC:1.2.4.1]
KPR_1048  aceF; highly similar to dihydrolipoyllysine-residue acetyltransferase from Salmonella enterica (tr [KO:K00627] [EC:2.3.1.12]
KPR_2889  unnamed protein product; highly similar to probable pyruvate-flavodoxin oxidoreductase from Escherichia coli O44:H18 strain 042 - EAEC (tr [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpr00010  Glycolysis / Gluconeogenesis
kpr00053  Ascorbate and aldarate metabolism
kpr00061  Fatty acid biosynthesis
kpr00071  Fatty acid degradation
kpr00190  Oxidative phosphorylation
kpr00220  Arginine biosynthesis
kpr00250  Alanine, aspartate and glutamate metabolism
kpr00280  Valine, leucine and isoleucine degradation
kpr00350  Tyrosine metabolism
kpr00470  D-Amino acid metabolism
kpr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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