KEGG   PATHWAY: kqv00020
Entry
kqv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella quasivariicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kqv00020  Citrate cycle (TCA cycle)
kqv00020

Module
kqv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kqv00020]
kqv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kqv00020]
kqv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kqv00020]
kqv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kqv00020]
kqv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kqv00020]
Other DBs
GO: 0006099
Organism
Klebsiella quasivariicola [GN:kqv]
Gene
B8P98_21080  citrate synthase [KO:K01647] [EC:2.3.3.1]
B8P98_20010  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B8P98_15965  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
B8P98_23105  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B8P98_17500  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
B8P98_19980  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
B8P98_19975  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
B8P98_22245  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B8P98_23125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B8P98_19965  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B8P98_19970  succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B8P98_19990  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B8P98_19985  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B8P98_20000  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
B8P98_19995  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
B8P98_25415  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
B8P98_25420  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
B8P98_25425  fumarate reductase subunit C [KO:K00246]
B8P98_25430  fumarate reductase subunit D [KO:K00247]
B8P98_14765  class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B8P98_14940  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B8P98_14935  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
B8P98_11740  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
B8P98_02470  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B8P98_14725  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
B8P98_08640  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
B8P98_01775  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B8P98_10980  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B8P98_23135  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B8P98_22240  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
B8P98_23130  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
B8P98_09585  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
B8P98_15405  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kqv00010  Glycolysis / Gluconeogenesis
kqv00053  Ascorbate and aldarate metabolism
kqv00061  Fatty acid biosynthesis
kqv00071  Fatty acid degradation
kqv00190  Oxidative phosphorylation
kqv00220  Arginine biosynthesis
kqv00250  Alanine, aspartate and glutamate metabolism
kqv00280  Valine, leucine and isoleucine degradation
kqv00350  Tyrosine metabolism
kqv00470  D-Amino acid metabolism
kqv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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