KEGG   PATHWAY: krd00020
Entry
krd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kosakonia radicincitans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
krd00020  Citrate cycle (TCA cycle)
krd00020

Module
krd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:krd00020]
krd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:krd00020]
krd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:krd00020]
krd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:krd00020]
krd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:krd00020]
Other DBs
GO: 0006099
Organism
Kosakonia radicincitans [GN:krd]
Gene
A3780_06650  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A3780_12205  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A3780_02860  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A3780_11625  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A3780_09020  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A3780_06675  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A3780_06680  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A3780_02850  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A3780_06690  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A3780_06685  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A3780_06665  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A3780_06670  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A3780_06655  sdhC; succinate dehydrogenase [KO:K00241]
A3780_06660  sdhD; succinate dehydrogenase [KO:K00242]
A3780_00755  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A3780_00750  fumarate reductase [KO:K00245] [EC:1.3.5.1]
A3780_00745  fumarate reductase subunit C [KO:K00246]
A3780_00740  fumarate reductase [KO:K00247]
A3780_13210  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A3780_09970  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A3780_09975  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A3780_09435  hypothetical protein [KO:K01675] [EC:4.2.1.2]
A3780_22255  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A3780_13175  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A3780_15680  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A3780_22990  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A3780_02840  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A3780_02845  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
A3780_10735  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
A3780_11995  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
krd00010  Glycolysis / Gluconeogenesis
krd00053  Ascorbate and aldarate metabolism
krd00061  Fatty acid biosynthesis
krd00071  Fatty acid degradation
krd00190  Oxidative phosphorylation
krd00220  Arginine biosynthesis
krd00250  Alanine, aspartate and glutamate metabolism
krd00280  Valine, leucine and isoleucine degradation
krd00350  Tyrosine metabolism
krd00470  D-Amino acid metabolism
krd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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