KEGG   PATHWAY: kst00020
Entry
kst00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Kuenenia stuttgartiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kst00020  Citrate cycle (TCA cycle)
kst00020

Module
kst_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kst00020]
kst_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kst00020]
kst_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kst00020]
kst_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kst00020]
Other DBs
GO: 0006099
Organism
Candidatus Kuenenia stuttgartiensis [GN:kst]
Gene
KSMBR1_2157  cimA; hypothetical protein [KO:K05942] [EC:2.3.3.3]
KSMBR1_2725  acnA; hypothetical protein [KO:K01681] [EC:4.2.1.3]
KSMBR1_3471  icdA; strongly similatr to isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSMBR1_3479  pdhD; strongly similar to dihydrolipoamide dehydrogenase of 2-oxoacid dehydrogenase (lipoamide) complex [KO:K00382] [EC:1.8.1.4]
KSMBR1_3321  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KSMBR1_2067  strongly similar to pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductases alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KSMBR1_2665  porA; hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KSMBR1_3320  strongly similar to pyruvate synthase beta chain [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KSMBR1_2068  strongly similar to pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductases beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KSMBR1_2666  porB; hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KSMBR1_2069  strongly similar to pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductases gamma subunit [KO:K00177] [EC:1.2.7.3]
KSMBR1_1008  korC; hypothetical protein [KO:K00177] [EC:1.2.7.3]
KSMBR1_2066  strongly similar to pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductases delta subunit (ferredoxin) [KO:K00176] [EC:1.2.7.3]
KSMBR1_2159  sucD; strongly similar to succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
KSMBR1_2158  sucC; strongly similar to succinyl CoA-synthetase subunit b [KO:K01903] [EC:6.2.1.5]
KSMBR1_2357  sdhA; hypothetical protein [KO:K00239] [EC:1.3.5.1]
KSMBR1_2005  frdB; hypothetical protein [KO:K00240] [EC:1.3.5.1]
KSMBR1_2358  sdhC; hypothetical protein [KO:K00241]
KSMBR1_2359  sdhD; hypothetical protein [KO:K00242]
KSMBR1_1007  hypothetical protein [KO:K01677] [EC:4.2.1.2]
KSMBR1_1006  hypothetical protein [KO:K01678] [EC:4.2.1.2]
KSMBR1_3373  mdh; strongly similar to malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KSMBR1_1159  pyc; strongly similar to pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KSMBR1_1800  oadA; strongly similar to oxaloacetate (OadA) or methylmalonyl-CoA decarboxylase (MmdA) [KO:K01960] [EC:6.4.1.1]
KSMBR1_0270  pckA; hypothetical protein [KO:K01610] [EC:4.1.1.49]
KSMBR1_2883  strongly similar to pyruvate:ferredoxin-oxoacid:ferredoxin oxidoreductases alpha subunit [KO:K00169] [EC:1.2.7.1]
KSMBR1_2881  hypothetical protein [KO:K00170] [EC:1.2.7.1]
KSMBR1_2156  hypothetical protein [KO:K00172] [EC:1.2.7.1]
KSMBR1_0247  nifJ; strongly similar to pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kst00010  Glycolysis / Gluconeogenesis
kst00053  Ascorbate and aldarate metabolism
kst00061  Fatty acid biosynthesis
kst00071  Fatty acid degradation
kst00190  Oxidative phosphorylation
kst00220  Arginine biosynthesis
kst00250  Alanine, aspartate and glutamate metabolism
kst00280  Valine, leucine and isoleucine degradation
kst00350  Tyrosine metabolism
kst00470  D-Amino acid metabolism
kst00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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