KEGG   PATHWAY: lew00020
Entry
lew00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lelliottia sp. WB101
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lew00020  Citrate cycle (TCA cycle)
lew00020

Module
lew_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lew00020]
lew_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lew00020]
lew_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lew00020]
lew_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lew00020]
lew_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lew00020]
Other DBs
GO: 0006099
Organism
Lelliottia sp. WB101 [GN:lew]
Gene
DAI21_20245  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DAI21_14770  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DAI21_00600  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DAI21_18185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DAI21_20210  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DAI21_20205  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DAI21_00620  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DAI21_20195  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DAI21_20200  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DAI21_20220  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DAI21_20215  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DAI21_20230  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
DAI21_20225  succinate dehydrogenase membrane anchor subunit [KO:K00242]
DAI21_02285  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
DAI21_02290  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
DAI21_02295  fumarate reductase subunit FrdC [KO:K00246]
DAI21_02300  fumarate reductase subunit FrdD [KO:K00247]
DAI21_16650  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DAI21_13105  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DAI21_16645  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DAI21_17025  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
DAI21_07020  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DAI21_12135  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DAI21_06230  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DAI21_00630  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DAI21_00625  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
DAI21_15050  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lew00010  Glycolysis / Gluconeogenesis
lew00053  Ascorbate and aldarate metabolism
lew00061  Fatty acid biosynthesis
lew00071  Fatty acid degradation
lew00190  Oxidative phosphorylation
lew00220  Arginine biosynthesis
lew00250  Alanine, aspartate and glutamate metabolism
lew00280  Valine, leucine and isoleucine degradation
lew00350  Tyrosine metabolism
lew00470  D-Amino acid metabolism
lew00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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