PATHWAY: lne01100 Help Entry lne01100                    Pathway                                 Name Metabolic pathways - Labrys sp. KNU-23 Class BRITE hierarchy Pathway map lne01100   Metabolic pathways Module lne_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:lne01100] lne_M00002   Glycolysis, core module involving three-carbon compounds [PATH:lne01100] lne_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lne01100] lne_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lne01100] lne_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:lne01100] lne_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lne01100] lne_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lne01100] lne_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:lne01100] lne_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:lne01100] lne_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lne01100] lne_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lne01100] lne_M00012   Glyoxylate cycle [PATH:lne01100] lne_M00015   Proline biosynthesis, glutamate => proline [PATH:lne01100] lne_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:lne01100] lne_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:lne01100] lne_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:lne01100] lne_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:lne01100] lne_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:lne01100] lne_M00021   Cysteine biosynthesis, serine => cysteine [PATH:lne01100] lne_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:lne01100] lne_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:lne01100] lne_M00026   Histidine biosynthesis, PRPP => histidine [PATH:lne01100] lne_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:lne01100] lne_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:lne01100] lne_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:lne01100] lne_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:lne01100] lne_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:lne01100] lne_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lne01100] lne_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lne01100] lne_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lne01100] lne_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lne01100] lne_M00082   Fatty acid biosynthesis, initiation [PATH:lne01100] lne_M00083   Fatty acid biosynthesis, elongation [PATH:lne01100] lne_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:lne01100] lne_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:lne01100] lne_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:lne01100] lne_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:lne01100] lne_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:lne01100] lne_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:lne01100] lne_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:lne01100] lne_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:lne01100] lne_M00140   C1-unit interconversion, prokaryotes [PATH:lne01100] lne_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:lne01100] lne_M00149   Succinate dehydrogenase, prokaryotes [PATH:lne01100] lne_M00155   Cytochrome c oxidase, prokaryotes [PATH:lne01100] lne_M00156   Cytochrome c oxidase, cbb3-type [PATH:lne01100] lne_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:lne01100] lne_M00165   Reductive pentose phosphate cycle (Calvin cycle) [PATH:lne01100] lne_M00168   CAM (Crassulacean acid metabolism), dark [PATH:lne01100] lne_M00169   CAM (Crassulacean acid metabolism), light [PATH:lne01100] lne_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:lne01100] lne_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lne01100] lne_M00417   Cytochrome o ubiquinol oxidase [PATH:lne01100] lne_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:lne01100] lne_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:lne01100] lne_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:lne01100] lne_M00551   Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol [PATH:lne01100] lne_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:lne01100] lne_M00555   Betaine biosynthesis, choline => betaine [PATH:lne01100] lne_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:lne01100] lne_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:lne01100] lne_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:lne01100] lne_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:lne01100] lne_M00621   Glycine cleavage system [PATH:lne01100] lne_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:lne01100] lne_M00793   dTDP-L-rhamnose biosynthesis [PATH:lne01100] lne_M00844   Arginine biosynthesis, ornithine => arginine [PATH:lne01100] lne_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:lne01100] lne_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:lne01100] lne_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:lne01100] lne_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:lne01100] lne_M00918   Aerobactin biosynthesis, lysine => aerobactin [PATH:lne01100] lne_M00919   Ectoine degradation, ectoine => aspartate [PATH:lne01100] lne_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:lne01100] lne_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:lne01100] lne_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:lne01100] lne_M00970   Proline degradation, proline => glutamate [PATH:lne01100] lne_M00975   Betaine degradation, bacteria, betaine => pyruvate [PATH:lne01100] Organism Labrys sp. KNU-23 [GN:lne] Related pathway lne00010   Glycolysis / Gluconeogenesis lne00020   Citrate cycle (TCA cycle) lne00030   Pentose phosphate pathway lne00040   Pentose and glucuronate interconversions lne00051   Fructose and mannose metabolism lne00052   Galactose metabolism lne00053   Ascorbate and aldarate metabolism lne00061   Fatty acid biosynthesis lne00071   Fatty acid degradation lne00130   Ubiquinone and other terpenoid-quinone biosynthesis lne00190   Oxidative phosphorylation lne00220   Arginine biosynthesis lne00230   Purine metabolism lne00240   Pyrimidine metabolism lne00250   Alanine, aspartate and glutamate metabolism lne00260   Glycine, serine and threonine metabolism lne00261   Monobactam biosynthesis lne00270   Cysteine and methionine metabolism lne00280   Valine, leucine and isoleucine degradation lne00290   Valine, leucine and isoleucine biosynthesis lne00300   Lysine biosynthesis lne00310   Lysine degradation lne00311   Penicillin and cephalosporin biosynthesis lne00330   Arginine and proline metabolism lne00332   Carbapenem biosynthesis lne00340   Histidine metabolism lne00350   Tyrosine metabolism lne00360   Phenylalanine metabolism lne00361   Chlorocyclohexane and chlorobenzene degradation lne00362   Benzoate degradation lne00364   Fluorobenzoate degradation lne00365   Furfural degradation lne00380   Tryptophan metabolism lne00400   Phenylalanine, tyrosine and tryptophan biosynthesis lne00401   Novobiocin biosynthesis lne00405   Phenazine biosynthesis lne00410   beta-Alanine metabolism lne00430   Taurine and hypotaurine metabolism lne00440   Phosphonate and phosphinate metabolism lne00450   Selenocompound metabolism lne00460   Cyanoamino acid metabolism lne00470   D-Amino acid metabolism lne00480   Glutathione metabolism lne00500   Starch and sucrose metabolism lne00511   Other glycan degradation lne00520   Amino sugar and nucleotide sugar metabolism lne00521   Streptomycin biosynthesis lne00523   Polyketide sugar unit biosynthesis lne00525   Acarbose and validamycin biosynthesis lne00540   Lipopolysaccharide biosynthesis lne00541   O-Antigen nucleotide sugar biosynthesis lne00543   Exopolysaccharide biosynthesis lne00550   Peptidoglycan biosynthesis lne00552   Teichoic acid biosynthesis lne00561   Glycerolipid metabolism lne00562   Inositol phosphate metabolism lne00564   Glycerophospholipid metabolism lne00600   Sphingolipid metabolism lne00620   Pyruvate metabolism lne00621   Dioxin degradation lne00622   Xylene degradation lne00623   Toluene degradation lne00624   Polycyclic aromatic hydrocarbon degradation lne00625   Chloroalkane and chloroalkene degradation lne00626   Naphthalene degradation lne00627   Aminobenzoate degradation lne00630   Glyoxylate and dicarboxylate metabolism lne00640   Propanoate metabolism lne00643   Styrene degradation lne00650   Butanoate metabolism lne00660   C5-Branched dibasic acid metabolism lne00670   One carbon pool by folate lne00680   Methane metabolism lne00730   Thiamine metabolism lne00740   Riboflavin metabolism lne00750   Vitamin B6 metabolism lne00760   Nicotinate and nicotinamide metabolism lne00770   Pantothenate and CoA biosynthesis lne00780   Biotin metabolism lne00785   Lipoic acid metabolism lne00790   Folate biosynthesis lne00791   Atrazine degradation lne00860   Porphyrin metabolism lne00900   Terpenoid backbone biosynthesis lne00903   Limonene degradation lne00906   Carotenoid biosynthesis lne00907   Pinene, camphor and geraniol degradation lne00910   Nitrogen metabolism lne00920   Sulfur metabolism lne00930   Caprolactam degradation lne00946   Degradation of flavonoids lne00997   Biosynthesis of various other secondary metabolites lne00999   Biosynthesis of various plant secondary metabolites lne01040   Biosynthesis of unsaturated fatty acids lne01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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