KEGG   PATHWAY: lpk00020
Entry
lpk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lactococcus piscium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpk00020  Citrate cycle (TCA cycle)
lpk00020

Module
lpk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lpk00020]
lpk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpk00020]
Other DBs
GO: 0006099
Organism
Lactococcus piscium [GN:lpk]
Gene
LACPI_1331  Citrate (Si)-synthase GltA [KO:K01647] [EC:2.3.3.1]
LACPI_1330  citB; Aconitate hydratase CitB [KO:K01681] [EC:4.2.1.3]
LACPI_1329  Isocitrate dehydrogenase [NADP] icd [KO:K00031] [EC:1.1.1.42]
LACPI_0825  pdhD; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex PdhD [KO:K00382] [EC:1.8.1.4]
LACPI_1730  Putative pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LACPI_0822  pdhA; Pyruvate dehydrogenase E1 component subunit alpha PdhA [KO:K00161] [EC:1.2.4.1]
LACPI_0823  pdhB; Pyruvate dehydrogenase E1 component subunit beta PdhB [KO:K00162] [EC:1.2.4.1]
LACPI_0824  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex PdhC [KO:K00627] [EC:2.3.1.12]
LACPI_0660  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpk00010  Glycolysis / Gluconeogenesis
lpk00053  Ascorbate and aldarate metabolism
lpk00061  Fatty acid biosynthesis
lpk00071  Fatty acid degradation
lpk00190  Oxidative phosphorylation
lpk00220  Arginine biosynthesis
lpk00250  Alanine, aspartate and glutamate metabolism
lpk00280  Valine, leucine and isoleucine degradation
lpk00350  Tyrosine metabolism
lpk00470  D-Amino acid metabolism
lpk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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