KEGG   PATHWAY: maua00020
Entry
maua00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mesocricetus auratus (golden hamster)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
maua00020  Citrate cycle (TCA cycle)
maua00020

Module
maua_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:maua00020]
maua_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:maua00020]
maua_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:maua00020]
maua_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:maua00020]
maua_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:maua00020]
Other DBs
GO: 0006099
Organism
Mesocricetus auratus (golden hamster) [GN:maua]
Gene
101826819  Cs; citrate synthase, mitochondrial isoform X2 [KO:K01647] [EC:2.3.3.1]
101830495  Acly; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
101840520  Aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
101826983  Aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
101826284  Idh2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
101836103  Idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
101835451  probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
101838042  Idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101834690  Idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101840901  Idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101830451  Ogdhl; LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
101835907  Ogdh; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
101833467  Dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
101831240  Dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
101826817  Suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
101834007  Sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101844458  Suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101827549  Sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
101839856  Sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
101840886  Sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
101825913  Sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
101842810  Fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
101833324  Mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101844686  Mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101824381  Pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
101831496  Pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
101834675  Pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
101830244  Pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
101826990  Pdha2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
101844675  Pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
101836522  Dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
maua00010  Glycolysis / Gluconeogenesis
maua00053  Ascorbate and aldarate metabolism
maua00061  Fatty acid biosynthesis
maua00062  Fatty acid elongation
maua00071  Fatty acid degradation
maua00190  Oxidative phosphorylation
maua00220  Arginine biosynthesis
maua00250  Alanine, aspartate and glutamate metabolism
maua00280  Valine, leucine and isoleucine degradation
maua00350  Tyrosine metabolism
maua00470  D-Amino acid metabolism
maua00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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