KEGG   PATHWAY: mca00020
Entry
mca00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methylococcus capsulatus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mca00020  Citrate cycle (TCA cycle)
mca00020

Module
mca_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mca00020]
mca_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mca00020]
mca_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mca00020]
mca_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mca00020]
Other DBs
GO: 0006099
Organism
Methylococcus capsulatus [GN:mca]
Gene
MCA0847  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MCA2485  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MCA3071  putative isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
MCA1952  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
MCA1953  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MCA3002  lpdA; pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MCA0968  sucD-1; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MCA0967  sucC-1; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
MCA1550  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MCA1542  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MCA1548  putative succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MCA1549  putative succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MCA1543  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MCA0610  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MCA3000  aceE; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
MCA3001  aceF; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
MCA0769  pyruvate ferredoxin/flavodoxin oxidoreductase family protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mca00010  Glycolysis / Gluconeogenesis
mca00053  Ascorbate and aldarate metabolism
mca00061  Fatty acid biosynthesis
mca00071  Fatty acid degradation
mca00190  Oxidative phosphorylation
mca00220  Arginine biosynthesis
mca00250  Alanine, aspartate and glutamate metabolism
mca00280  Valine, leucine and isoleucine degradation
mca00350  Tyrosine metabolism
mca00470  D-Amino acid metabolism
mca00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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