PATHWAY: mcoo01100 Help Entry mcoo01100                   Pathway                                 Name Metabolic pathways - Mycobacterium cookii Class BRITE hierarchy Pathway map mcoo01100   Metabolic pathways Module mcoo_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:mcoo01100] mcoo_M00002   Glycolysis, core module involving three-carbon compounds [PATH:mcoo01100] mcoo_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcoo01100] mcoo_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mcoo01100] mcoo_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:mcoo01100] mcoo_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:mcoo01100] mcoo_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:mcoo01100] mcoo_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcoo01100] mcoo_M00012   Glyoxylate cycle [PATH:mcoo01100] mcoo_M00015   Proline biosynthesis, glutamate => proline [PATH:mcoo01100] mcoo_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:mcoo01100] mcoo_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:mcoo01100] mcoo_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:mcoo01100] mcoo_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:mcoo01100] mcoo_M00021   Cysteine biosynthesis, serine => cysteine [PATH:mcoo01100] mcoo_M00026   Histidine biosynthesis, PRPP => histidine [PATH:mcoo01100] mcoo_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:mcoo01100] mcoo_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:mcoo01100] mcoo_M00035   Methionine degradation [PATH:mcoo01100] mcoo_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:mcoo01100] mcoo_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:mcoo01100] mcoo_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:mcoo01100] mcoo_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:mcoo01100] mcoo_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:mcoo01100] mcoo_M00082   Fatty acid biosynthesis, initiation [PATH:mcoo01100] mcoo_M00083   Fatty acid biosynthesis, elongation [PATH:mcoo01100] mcoo_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:mcoo01100] mcoo_M00087   beta-Oxidation [PATH:mcoo01100] mcoo_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:mcoo01100] mcoo_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:mcoo01100] mcoo_M00098   Acylglycerol degradation [PATH:mcoo01100] mcoo_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:mcoo01100] mcoo_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:mcoo01100] mcoo_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:mcoo01100] mcoo_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:mcoo01100] mcoo_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:mcoo01100] mcoo_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:mcoo01100] mcoo_M00151   Cytochrome bc1 complex respiratory unit [PATH:mcoo01100] mcoo_M00155   Cytochrome c oxidase, prokaryotes [PATH:mcoo01100] mcoo_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:mcoo01100] mcoo_M00168   CAM (Crassulacean acid metabolism), dark [PATH:mcoo01100] mcoo_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:mcoo01100] mcoo_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcoo01100] mcoo_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:mcoo01100] mcoo_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:mcoo01100] mcoo_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:mcoo01100] mcoo_M00545   Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA [PATH:mcoo01100] mcoo_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:mcoo01100] mcoo_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:mcoo01100] mcoo_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:mcoo01100] mcoo_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:mcoo01100] mcoo_M00621   Glycine cleavage system [PATH:mcoo01100] mcoo_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:mcoo01100] mcoo_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:mcoo01100] mcoo_M00793   dTDP-L-rhamnose biosynthesis [PATH:mcoo01100] mcoo_M00844   Arginine biosynthesis, ornithine => arginine [PATH:mcoo01100] mcoo_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:mcoo01100] mcoo_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:mcoo01100] mcoo_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:mcoo01100] mcoo_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:mcoo01100] mcoo_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:mcoo01100] mcoo_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:mcoo01100] mcoo_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:mcoo01100] mcoo_M00970   Proline degradation, proline => glutamate [PATH:mcoo01100] mcoo_M00972   Proline metabolism [PATH:mcoo01100] Organism Mycobacterium cookii [GN:mcoo] Related pathway mcoo00010   Glycolysis / Gluconeogenesis mcoo00020   Citrate cycle (TCA cycle) mcoo00030   Pentose phosphate pathway mcoo00040   Pentose and glucuronate interconversions mcoo00051   Fructose and mannose metabolism mcoo00052   Galactose metabolism mcoo00053   Ascorbate and aldarate metabolism mcoo00061   Fatty acid biosynthesis mcoo00071   Fatty acid degradation mcoo00100   Steroid biosynthesis mcoo00121   Secondary bile acid biosynthesis mcoo00130   Ubiquinone and other terpenoid-quinone biosynthesis mcoo00190   Oxidative phosphorylation mcoo00220   Arginine biosynthesis mcoo00230   Purine metabolism mcoo00240   Pyrimidine metabolism mcoo00250   Alanine, aspartate and glutamate metabolism mcoo00260   Glycine, serine and threonine metabolism mcoo00261   Monobactam biosynthesis mcoo00270   Cysteine and methionine metabolism mcoo00280   Valine, leucine and isoleucine degradation mcoo00290   Valine, leucine and isoleucine biosynthesis mcoo00300   Lysine biosynthesis mcoo00310   Lysine degradation mcoo00330   Arginine and proline metabolism mcoo00332   Carbapenem biosynthesis mcoo00340   Histidine metabolism mcoo00350   Tyrosine metabolism mcoo00360   Phenylalanine metabolism mcoo00361   Chlorocyclohexane and chlorobenzene degradation mcoo00362   Benzoate degradation mcoo00364   Fluorobenzoate degradation mcoo00380   Tryptophan metabolism mcoo00400   Phenylalanine, tyrosine and tryptophan biosynthesis mcoo00401   Novobiocin biosynthesis mcoo00410   beta-Alanine metabolism mcoo00430   Taurine and hypotaurine metabolism mcoo00450   Selenocompound metabolism mcoo00460   Cyanoamino acid metabolism mcoo00470   D-Amino acid metabolism mcoo00480   Glutathione metabolism mcoo00500   Starch and sucrose metabolism mcoo00514   Other types of O-glycan biosynthesis mcoo00515   Mannose type O-glycan biosynthesis mcoo00520   Amino sugar and nucleotide sugar metabolism mcoo00521   Streptomycin biosynthesis mcoo00523   Polyketide sugar unit biosynthesis mcoo00525   Acarbose and validamycin biosynthesis mcoo00540   Lipopolysaccharide biosynthesis mcoo00541   O-Antigen nucleotide sugar biosynthesis mcoo00542   O-Antigen repeat unit biosynthesis mcoo00543   Exopolysaccharide biosynthesis mcoo00550   Peptidoglycan biosynthesis mcoo00552   Teichoic acid biosynthesis mcoo00561   Glycerolipid metabolism mcoo00562   Inositol phosphate metabolism mcoo00564   Glycerophospholipid metabolism mcoo00571   Lipoarabinomannan (LAM) biosynthesis mcoo00572   Arabinogalactan biosynthesis - Mycobacterium mcoo00592   alpha-Linolenic acid metabolism mcoo00620   Pyruvate metabolism mcoo00621   Dioxin degradation mcoo00622   Xylene degradation mcoo00623   Toluene degradation mcoo00625   Chloroalkane and chloroalkene degradation mcoo00626   Naphthalene degradation mcoo00627   Aminobenzoate degradation mcoo00630   Glyoxylate and dicarboxylate metabolism mcoo00633   Nitrotoluene degradation mcoo00640   Propanoate metabolism mcoo00643   Styrene degradation mcoo00650   Butanoate metabolism mcoo00660   C5-Branched dibasic acid metabolism mcoo00670   One carbon pool by folate mcoo00680   Methane metabolism mcoo00730   Thiamine metabolism mcoo00740   Riboflavin metabolism mcoo00750   Vitamin B6 metabolism mcoo00760   Nicotinate and nicotinamide metabolism mcoo00770   Pantothenate and CoA biosynthesis mcoo00780   Biotin metabolism mcoo00785   Lipoic acid metabolism mcoo00790   Folate biosynthesis mcoo00860   Porphyrin metabolism mcoo00900   Terpenoid backbone biosynthesis mcoo00903   Limonene degradation mcoo00906   Carotenoid biosynthesis mcoo00907   Pinene, camphor and geraniol degradation mcoo00910   Nitrogen metabolism mcoo00920   Sulfur metabolism mcoo00930   Caprolactam degradation mcoo00946   Degradation of flavonoids mcoo00983   Drug metabolism - other enzymes mcoo00984   Steroid degradation mcoo00999   Biosynthesis of various plant secondary metabolites mcoo01040   Biosynthesis of unsaturated fatty acids mcoo01053   Biosynthesis of siderophore group nonribosomal peptides mcoo01055   Biosynthesis of vancomycin group antibiotics mcoo01059   Biosynthesis of enediyne antibiotics KO pathway ko01100     LinkDB All DBs

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