KEGG   PATHWAY: mesq00020
Entry
mesq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mesoflavibacter sp. HG96
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mesq00020  Citrate cycle (TCA cycle)
mesq00020

Module
mesq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mesq00020]
mesq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mesq00020]
mesq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mesq00020]
mesq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mesq00020]
mesq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mesq00020]
Other DBs
GO: 0006099
Organism
Mesoflavibacter sp. HG96 [GN:mesq]
Gene
C7H62_1705  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
C7H62_2003  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C7H62_2002  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C7H62_2037  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
C7H62_1381  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C7H62_1383  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
C7H62_1890  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
C7H62_2287  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7H62_2647  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7H62_2489  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
C7H62_1823  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
C7H62_0886  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C7H62_0884  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
C7H62_0887  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
C7H62_2567  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
C7H62_1731  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7H62_2685  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C7H62_2252  Pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
C7H62_0814  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
C7H62_0380  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
C7H62_1512  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
C7H62_0379  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mesq00010  Glycolysis / Gluconeogenesis
mesq00053  Ascorbate and aldarate metabolism
mesq00061  Fatty acid biosynthesis
mesq00071  Fatty acid degradation
mesq00190  Oxidative phosphorylation
mesq00220  Arginine biosynthesis
mesq00250  Alanine, aspartate and glutamate metabolism
mesq00280  Valine, leucine and isoleucine degradation
mesq00350  Tyrosine metabolism
mesq00470  D-Amino acid metabolism
mesq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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