KEGG   PATHWAY: metl00020
Entry
metl00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylomonas sp. LW13
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
metl00020  Citrate cycle (TCA cycle)
metl00020

Module
metl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:metl00020]
metl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:metl00020]
metl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:metl00020]
metl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:metl00020]
Other DBs
GO: 0006099
Organism
Methylomonas sp. LW13 [GN:metl]
Gene
U737_08430  citrate synthase [KO:K01647] [EC:2.3.3.1]
U737_01555  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
U737_11865  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
U737_01595  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
U737_11875  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
U737_09765  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
U737_09760  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
U737_01210  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
U737_04115  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
U737_04120  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
U737_08450  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
U737_08455  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
U737_08440  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
U737_08445  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
U737_23430  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
U737_08945  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
U737_02025  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
U737_02020  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
U737_01240  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
U737_01235  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
U737_16130  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
metl00010  Glycolysis / Gluconeogenesis
metl00053  Ascorbate and aldarate metabolism
metl00061  Fatty acid biosynthesis
metl00071  Fatty acid degradation
metl00190  Oxidative phosphorylation
metl00220  Arginine biosynthesis
metl00250  Alanine, aspartate and glutamate metabolism
metl00280  Valine, leucine and isoleucine degradation
metl00350  Tyrosine metabolism
metl00470  D-Amino acid metabolism
metl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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