KEGG   PATHWAY: mlf03030
Entry
mlf03030                    Pathway                                
Name
DNA replication - Myotis lucifugus (little brown bat)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mlf03030  DNA replication
mlf03030

Organism
Myotis lucifugus (little brown bat) [GN:mlf]
Gene
102422994  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
102435430  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
102435762  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
102418168  PCNA; proliferating cell nuclear antigen [KO:K04802]
102433462  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
102435517  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
102426172  DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
102418207  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
102424780  POLA2; DNA polymerase alpha subunit B isoform X2 [KO:K02321]
102424313  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
102417826  PRIM2; LOW QUALITY PROTEIN: DNA primase large subunit [KO:K02685]
102428691  POLD1; LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
102435922  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
102433503  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
102430884  POLD4; DNA polymerase delta subunit 4 isoform X2 [KO:K03505]
102440157  POLE; LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
102432523  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
102434695  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
102423340  POLE4; LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
102424407  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
102428079  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
102442842  MCM4; LOW QUALITY PROTEIN: DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
102422290  MCM5; LOW QUALITY PROTEIN: DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
102428933  MCM6; DNA replication licensing factor MCM6 isoform X1 [KO:K02542] [EC:5.6.2.3]
102428518  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
102429523  RPA2; replication protein A 32 kDa subunit [KO:K10739]
102430268  RPA4; LOW QUALITY PROTEIN: replication protein A 30 kDa subunit [KO:K10741]
102441687  RPA3; replication protein A 14 kDa subunit [KO:K10740]
102422273  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
102430577  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
102430934  RFC2; replication factor C subunit 2 isoform X2 [KO:K10755]
102437136  RFC3; replication factor C subunit 3 [KO:K10756]
102436020  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
102433329  ribonuclease H2 subunit B [KO:K10744]
102428228  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
102426221  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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