KEGG   PATHWAY: mmf03410
Entry
mmf03410                    Pathway                                
Name
Base excision repair - Molossus molossus (Pallas's mastiff bat)
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
mmf03410  Base excision repair
mmf03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Molossus molossus (Pallas's mastiff bat) [GN:mmf]
Gene
118633141  OGG1; N-glycosylase/DNA lyase isoform X1 [KO:K03660] [EC:3.2.2.- 4.2.99.18]
118641916  NTHL1; endonuclease III-like protein 1 isoform X1 [KO:K10773] [EC:3.2.2.- 4.2.99.18]
118619548  endonuclease 8-like 1 isoform X1 [KO:K10567] [EC:3.2.2.- 4.2.99.18]
118642743  endonuclease 8-like 1 isoform X1 [KO:K10567] [EC:3.2.2.- 4.2.99.18]
118615448  NEIL2; endonuclease 8-like 2 [KO:K10568] [EC:3.2.2.- 4.2.99.18]
118622997  NEIL3; endonuclease 8-like 3 [KO:K10569] [EC:3.2.2.- 4.2.99.18]
118639998  UNG; uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
118624331  SMUG1; single-strand selective monofunctional uracil DNA glycosylase [KO:K10800] [EC:3.2.2.-]
118626051  MUTYH; adenine DNA glycosylase isoform X1 [KO:K03575] [EC:3.2.2.31]
118641709  MPG; DNA-3-methyladenine glycosylase [KO:K03652] [EC:3.2.2.21]
118633193  MBD4; methyl-CpG-binding domain protein 4 isoform X1 [KO:K10801] [EC:3.2.2.-]
118624126  TDG; G/T mismatch-specific thymine DNA glycosylase isoform X1 [KO:K20813] [EC:3.2.2.29]
118641624  APEX1; DNA-(apurinic or apyrimidinic site) endonuclease [KO:K10771] [EC:3.1.11.2]
118638503  bifunctional polynucleotide phosphatase/kinase [KO:K08073] [EC:3.1.3.32 2.7.1.78]
118630724  TDP1; tyrosyl-DNA phosphodiesterase 1 isoform X1 [KO:K10862] [EC:3.1.4.-]
118622846  POLB; DNA polymerase beta [KO:K02330] [EC:2.7.7.7 4.2.99.-]
118632149  POLL; DNA polymerase lambda [KO:K03512] [EC:2.7.7.7 4.2.99.-]
118624110  HMGB1; high mobility group protein B1 [KO:K10802]
118642004  LOW QUALITY PROTEIN: high mobility group protein B1-like [KO:K10802]
118640535  PARP1; poly [ADP-ribose] polymerase 1 isoform X1 [KO:K24070] [EC:2.4.2.30]
118633156  PARP3; protein mono-ADP-ribosyltransferase PARP3 [KO:K10798] [EC:2.4.2.30]
118628646  PARP2; poly [ADP-ribose] polymerase 2 [KO:K10798] [EC:2.4.2.30]
118624139  PARP4; protein mono-ADP-ribosyltransferase PARP4 [KO:K10798] [EC:2.4.2.30]
118632029  PARG; poly(ADP-ribose) glycohydrolase isoform X1 [KO:K07759] [EC:3.2.1.143]
118627249  ADPRS; ADP-ribose glycohydrolase ARH3 [KO:K11687] [EC:3.2.1.143]
118630120  APTX; aprataxin isoform X1 [KO:K10863] [EC:3.6.1.70 3.6.1.71 3.6.1.72]
118639364  XRCC1; DNA repair protein XRCC1 isoform X1 [KO:K10803]
118640959  POLG; DNA polymerase subunit gamma-1 [KO:K02332] [EC:2.7.7.7]
118633968  POLG2; DNA polymerase subunit gamma-2, mitochondrial isoform X1 [KO:K02333]
118634396  LIG3; DNA ligase 3 isoform X1 [KO:K10776] [EC:6.5.1.1]
118638280  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
118620444  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
118628111  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
118628943  POLD4; LOW QUALITY PROTEIN: DNA polymerase delta subunit 4 [KO:K03505]
118639783  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
118625338  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
118630230  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
118630558  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
118618985  PCNA; proliferating cell nuclear antigen isoform X1 [KO:K04802]
118625437  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
118629393  LOW QUALITY PROTEIN: replication factor C subunit 2-like [KO:K10755]
118642759  RFC2; replication factor C subunit 2 [KO:K10755]
118617095  RFC4; replication factor C subunit 4 [KO:K10755]
118639901  RFC5; replication factor C subunit 5 [KO:K10756]
118622565  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
118627982  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
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