KEGG   PATHWAY: mpae00020
Entry
mpae00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium pallens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mpae00020  Citrate cycle (TCA cycle)
mpae00020

Module
mpae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mpae00020]
mpae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mpae00020]
mpae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mpae00020]
mpae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mpae00020]
mpae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mpae00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium pallens [GN:mpae]
Gene
K0O64_24270  citrate synthase [KO:K01647] [EC:2.3.3.1]
K0O64_24295  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
K0O64_13380  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K0O64_06900  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K0O64_21060  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
K0O64_22545  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
K0O64_03470  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K0O64_19630  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K0O64_19625  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K0O64_23715  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K0O64_23720  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K0O64_01685  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K0O64_07040  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K0O64_27565  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
K0O64_01680  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K0O64_07035  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K0O64_07050  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
K0O64_07045  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
K0O64_05955  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K0O64_10905  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
K0O64_10245  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K0O64_01355  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
K0O64_18605  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K0O64_21065  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
K0O64_11945  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K0O64_18285  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
K0O64_20135  hypothetical protein [KO:K00169] [EC:1.2.7.1]
K0O64_20140  hypothetical protein [KO:K00170] [EC:1.2.7.1]
K0O64_20130  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mpae00010  Glycolysis / Gluconeogenesis
mpae00053  Ascorbate and aldarate metabolism
mpae00061  Fatty acid biosynthesis
mpae00071  Fatty acid degradation
mpae00190  Oxidative phosphorylation
mpae00220  Arginine biosynthesis
mpae00250  Alanine, aspartate and glutamate metabolism
mpae00280  Valine, leucine and isoleucine degradation
mpae00350  Tyrosine metabolism
mpae00470  D-Amino acid metabolism
mpae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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