KEGG   PATHWAY: muz00020
Entry
muz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mumia sp. ZJ1417
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
muz00020  Citrate cycle (TCA cycle)
muz00020

Module
muz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:muz00020]
muz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:muz00020]
muz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:muz00020]
muz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:muz00020]
muz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:muz00020]
Other DBs
GO: 0006099
Organism
Mumia sp. ZJ1417 [GN:muz]
Gene
H4N58_03765  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
H4N58_16380  citrate synthase [KO:K01647] [EC:2.3.3.1]
H4N58_11170  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H4N58_12615  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H4N58_05815  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
H4N58_02065  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H4N58_07460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H4N58_16880  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H4N58_16885  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H4N58_16050  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H4N58_16055  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H4N58_15905  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H4N58_15900  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H4N58_15910  succinate dehydrogenase cytochrome b subunit [KO:K00241]
H4N58_04580  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H4N58_16005  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H4N58_15725  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
H4N58_01060  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
H4N58_01125  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
H4N58_07140  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
H4N58_07455  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
muz00010  Glycolysis / Gluconeogenesis
muz00053  Ascorbate and aldarate metabolism
muz00061  Fatty acid biosynthesis
muz00062  Fatty acid elongation
muz00071  Fatty acid degradation
muz00190  Oxidative phosphorylation
muz00220  Arginine biosynthesis
muz00250  Alanine, aspartate and glutamate metabolism
muz00280  Valine, leucine and isoleucine degradation
muz00350  Tyrosine metabolism
muz00470  D-Amino acid metabolism
muz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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