KEGG   PATHWAY: myd00020
Entry
myd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Myotis davidii (David's myotis)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
myd00020  Citrate cycle (TCA cycle)
myd00020

Module
myd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:myd00020]
myd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:myd00020]
myd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:myd00020]
myd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:myd00020]
myd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:myd00020]
Other DBs
GO: 0006099
Organism
Myotis davidii (David's myotis) [GN:myd]
Gene
102764521  CS; citrate synthase [KO:K01647] [EC:2.3.3.1]
102759921  ACLY; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
102758056  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
102757696  ACO1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
102757893  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
102759038  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
102762142  IDH3B; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
102771723  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
102759311  IDH3A; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
102760750  IDH3G; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
102766882  OGDHL; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
102754653  OGDH; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
102762242  DLST; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
102774631  DLD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
102769796  SUCLG1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102754575  SUCLA2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102756597  SUCLG2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102766070  SDHA; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
102752857  SDHB; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
102771621  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
102753591  SDHC; succinate dehydrogenase complex subunit C [KO:K00236]
102763784  SDHD; succinate dehydrogenase complex subunit D [KO:K00237]
102760799  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
102758532  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
102765341  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
102771743  PC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
102754608  PCK1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
102771630  PCK2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
102759810  PDHA2; pyruvate dehydrogenase (lipoamide) alpha 2 [KO:K00161] [EC:1.2.4.1]
102771346  PDHA1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
102775559  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
102765778  PDHB; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
102757510  DLAT; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
myd00010  Glycolysis / Gluconeogenesis
myd00053  Ascorbate and aldarate metabolism
myd00061  Fatty acid biosynthesis
myd00062  Fatty acid elongation
myd00071  Fatty acid degradation
myd00190  Oxidative phosphorylation
myd00220  Arginine biosynthesis
myd00250  Alanine, aspartate and glutamate metabolism
myd00280  Valine, leucine and isoleucine degradation
myd00350  Tyrosine metabolism
myd00470  D-Amino acid metabolism
myd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system