KEGG   PATHWAY: nal00020
Entry
nal00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nocardiopsis alba
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nal00020  Citrate cycle (TCA cycle)
nal00020

Module
nal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nal00020]
nal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nal00020]
nal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nal00020]
nal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nal00020]
nal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nal00020]
Other DBs
GO: 0006099
Organism
Nocardiopsis alba [GN:nal]
Gene
B005_2438  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B005_5398  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B005_1126  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
B005_0846  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
B005_1773  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B005_0129  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B005_2653  acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B005_2652  thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B005_2848  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
B005_2847  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
B005_1098  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B005_1097  4Fe-4S binding domain protein [KO:K00240] [EC:1.3.5.1]
B005_1099  sdhC; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family protein [KO:K00241]
B005_2907  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
B005_3677  malate dehydrogenase family protein [KO:K00024] [EC:1.1.1.37]
B005_0351  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
B005_1293  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
B005_2063  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
B005_2062  transketolase, pyrimidine binding domain protein [KO:K00162] [EC:1.2.4.1]
B005_2061  2-oxoacid dehydrogenases acyltransferase family protein [KO:K00627] [EC:2.3.1.12]
B005_0130  glycine cleavage H-family protein [KO:K00627] [EC:2.3.1.12]
B005_0131  2-oxoacid dehydrogenases acyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nal00010  Glycolysis / Gluconeogenesis
nal00053  Ascorbate and aldarate metabolism
nal00061  Fatty acid biosynthesis
nal00071  Fatty acid degradation
nal00190  Oxidative phosphorylation
nal00220  Arginine biosynthesis
nal00250  Alanine, aspartate and glutamate metabolism
nal00280  Valine, leucine and isoleucine degradation
nal00350  Tyrosine metabolism
nal00470  D-Amino acid metabolism
nal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system