KEGG   PATHWAY: naq03030
Entry
naq03030                    Pathway                                
Name
DNA replication - Neisseria animalis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
naq03030  DNA replication
naq03030

Organism
Neisseria animalis [GN:naq]
Gene
D0T90_00540  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D0T90_06590  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
D0T90_06080  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
D0T90_01020  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
D0T90_02170  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
D0T90_00360  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
D0T90_01705  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
D0T90_02395  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
D0T90_07535  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
D0T90_08675  DNA primase [KO:K02316] [EC:2.7.7.101]
D0T90_08755  single-stranded DNA-binding protein [KO:K03111]
D0T90_02115  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
D0T90_03945  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
D0T90_05795  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
D0T90_02135  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system