KEGG   PATHWAY: ncx00020
Entry
ncx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nonomuraea coxensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ncx00020  Citrate cycle (TCA cycle)
ncx00020

Module
ncx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ncx00020]
ncx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ncx00020]
ncx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ncx00020]
ncx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ncx00020]
ncx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ncx00020]
Other DBs
GO: 0006099
Organism
Nonomuraea coxensis [GN:ncx]
Gene
Nocox_29100  citZ2; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Nocox_03970  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Nocox_04985  citZ1; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Nocox_12065  citrate synthase [KO:K01647] [EC:2.3.3.1]
Nocox_29105  leuA3; 2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
Nocox_30130  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Nocox_04995  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Nocox_26430  aceF2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Nocox_35830  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Nocox_39505  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Nocox_14470  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Nocox_38160  korA2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Nocox_02435  korA1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Nocox_38155  korB2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Nocox_02430  korB1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Nocox_04910  sucD1; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Nocox_11145  sucD3; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Nocox_04905  sucC1; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Nocox_11140  sucC2; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Nocox_36750  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Nocox_36785  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Nocox_36745  frdB1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Nocox_36790  frdB2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Nocox_36755  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
Nocox_37060  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
Nocox_37080  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Nocox_05020  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Nocox_37180  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
Nocox_30970  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Nocox_22630  pdhC1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Nocox_21205  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
Nocox_21200  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
Nocox_21210  padE; NADH-dependent phenylglyoxylate dehydrogenase subunit gamma [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ncx00010  Glycolysis / Gluconeogenesis
ncx00053  Ascorbate and aldarate metabolism
ncx00061  Fatty acid biosynthesis
ncx00071  Fatty acid degradation
ncx00190  Oxidative phosphorylation
ncx00220  Arginine biosynthesis
ncx00250  Alanine, aspartate and glutamate metabolism
ncx00280  Valine, leucine and isoleucine degradation
ncx00350  Tyrosine metabolism
ncx00470  D-Amino acid metabolism
ncx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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