KEGG   PATHWAY: ngi00270
Entry
ngi00270                    Pathway                                
Name
Cysteine and methionine metabolism - Nannospalax galili (Upper Galilee mountains blind mole rat)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
ngi00270  Cysteine and methionine metabolism
ngi00270

Module
ngi_M00034  Methionine salvage pathway [PATH:ngi00270]
ngi_M00035  Methionine degradation [PATH:ngi00270]
ngi_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:ngi00270]
Other DBs
GO: 0006534 0006555
Organism
Nannospalax galili (Upper Galilee mountains blind mole rat) [GN:ngi]
Gene
103744340  Cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
103742867  Kyat1; kynurenine aminotransferase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
103730106  Kyat3; kynurenine aminotransferase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
103729336  Cbs; cystathionine-beta-synthase [KO:K01697] [EC:4.2.1.22]
103750287  Bhmt; betaine--homocysteine S-methyltransferase [KO:K00544] [EC:2.1.1.5]
103750288  Bhmt2; betaine--homocysteine S-methyltransferase 2 [KO:K00547] [EC:2.1.1.10]
103739791  Mat2a; methionine adenosyltransferase 2A [KO:K00789] [EC:2.5.1.6]
103747420  Mat1a; methionine adenosyltransferase 1A [KO:K00789] [EC:2.5.1.6]
103747745  Mat2b; methionine adenosyltransferase 2B [KO:K00789] [EC:2.5.1.6]
103749544  Amd1; adenosylmethionine decarboxylase 1 [KO:K01611] [EC:4.1.1.50]
103751576  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
103732919  Srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
103730144  Sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
103730662  Mtap; methylthioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
103751282  Lacc1; laccase domain containing 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
103751862  Mri1; methylthioribose-1-phosphate isomerase 1 [KO:K08963] [EC:5.3.1.23]
103749499  Apip; APAF1 interacting protein [KO:K08964] [EC:4.2.1.109]
103744997  Enoph1; enolase-phosphatase 1 [KO:K09880] [EC:3.1.3.77]
103747650  Adi1; acireductone dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
103735627  Tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
103728550  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
103743685  Il4i1; interleukin 4 induced 1 [KO:K03334] [EC:1.4.3.2]
103743345  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
103730804  Gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
103747573  Dnmt1; DNA methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
103746385  Dnmt3a; DNA methyltransferase 3 alpha [KO:K17398] [EC:2.1.1.37]
103735528  DNA (cytosine-5)-methyltransferase 3B [KO:K17399] [EC:2.1.1.37]
103735529  DNA (cytosine-5)-methyltransferase 3B-like [KO:K17399] [EC:2.1.1.37]
103728298  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
103744548  Ahcyl2; adenosylhomocysteinase like 2 [KO:K01251] [EC:3.13.2.1]
103747823  Ahcyl1; adenosylhomocysteinase like 1 [KO:K01251] [EC:3.13.2.1]
103736719  Bcat1; branched chain amino acid transaminase 1 [KO:K00826] [EC:2.6.1.42]
103743632  Bcat2; branched chain amino acid transaminase 2 [KO:K00826] [EC:2.6.1.42]
103735910  Agxt2; alanine--glyoxylate aminotransferase 2 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
103736919  Gclc; glutamate-cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
103737649  Gclm; glutamate-cysteine ligase modifier subunit [KO:K11205]
103745864  Gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
103727417  Cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
103733179  Got1; glutamic-oxaloacetic transaminase 1 [KO:K14454] [EC:2.6.1.1]
103724470  Got1l1; glutamic-oxaloacetic transaminase 1-like 1 [KO:K14454] [EC:2.6.1.1]
103728564  putative aspartate aminotransferase, cytoplasmic 2 [KO:K14454] [EC:2.6.1.1]
103735119  Got2; glutamic-oxaloacetic transaminase 2 [KO:K14455] [EC:2.6.1.1]
103748624  Tst; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
103748623  Mpst; mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
103732966  Ldha; lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
103732974  L-lactate dehydrogenase C chain-like [KO:K00016] [EC:1.1.1.27]
103739303  L-lactate dehydrogenase A-like 6A [KO:K00016] [EC:1.1.1.27]
103748808  Ldhb; lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
103748091  Mdh1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
103733471  Mdh2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
103745538  Sdsl; serine dehydratase like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
103745539  Sds; serine dehydratase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
103732004  Phgdh; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
103749047  Psat1; phosphoserine aminotransferase 1 [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
ngi00010  Glycolysis / Gluconeogenesis
ngi00250  Alanine, aspartate and glutamate metabolism
ngi00260  Glycine, serine and threonine metabolism
ngi00290  Valine, leucine and isoleucine biosynthesis
ngi00430  Taurine and hypotaurine metabolism
ngi00480  Glutathione metabolism
ngi00620  Pyruvate metabolism
ngi00640  Propanoate metabolism
ngi00770  Pantothenate and CoA biosynthesis
ngi00900  Terpenoid backbone biosynthesis
ngi00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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