KEGG   PATHWAY: ngl00020
Entry
ngl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ngl00020  Citrate cycle (TCA cycle)
ngl00020

Module
ngl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ngl00020]
ngl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ngl00020]
ngl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ngl00020]
ngl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ngl00020]
Other DBs
GO: 0006099
Organism
Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141 [GN:ngl]
Gene
RG1141_CH18050  Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
RG1141_CH18060  Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
RG1141_CH15460  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RG1141_CH36630  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RG1141_CH14330  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
RG1141_CH36080  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RG1141_CH36070  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
RG1141_CH15570  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RG1141_CH28220  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RG1141_CH36030  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RG1141_CH36090  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
RG1141_CH36100  betA; Succinyl-CoA ligase [ADP-forming] subunit BetA [KO:K01903] [EC:6.2.1.5]
RG1141_CH36150  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RG1141_CH36140  Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RG1141_CH36170  Succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
RG1141_CH36160  Succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
RG1141_PB00410  Fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RG1141_CH16470  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
RG1141_CH36110  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RG1141_CH37480  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RG1141_CH40210  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
RG1141_CH15530  Dehydrogenase E1 component [KO:K00161] [EC:1.2.4.1]
RG1141_CH15540  betA; Pyruvate dehydrogenase E1 component subunit BetA [KO:K00162] [EC:1.2.4.1]
RG1141_CH15550  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ngl00010  Glycolysis / Gluconeogenesis
ngl00053  Ascorbate and aldarate metabolism
ngl00061  Fatty acid biosynthesis
ngl00071  Fatty acid degradation
ngl00190  Oxidative phosphorylation
ngl00220  Arginine biosynthesis
ngl00250  Alanine, aspartate and glutamate metabolism
ngl00280  Valine, leucine and isoleucine degradation
ngl00350  Tyrosine metabolism
ngl00470  D-Amino acid metabolism
ngl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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