KEGG   PATHWAY: nrh03430
Entry
nrh03430                    Pathway                                
Name
Mismatch repair - Nitratireductor rhodophyticola
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
nrh03430  Mismatch repair
nrh03430

Other DBs
GO: 0006298
Organism
Nitratireductor rhodophyticola [GN:nrh]
Gene
T8J41_03535  mutS; DNA mismatch repair protein MutS [KO:K03555]
T8J41_01150  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
T8J41_12865  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
T8J41_02045  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
T8J41_19345  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
T8J41_14340  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
T8J41_16200  single-stranded DNA-binding protein [KO:K03111]
T8J41_20260  single-stranded DNA-binding protein [KO:K03111]
T8J41_14455  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
T8J41_04265  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
T8J41_04050  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
T8J41_06175  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
T8J41_15860  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
T8J41_06105  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
T8J41_18040  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
T8J41_12815  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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